Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1348 ATGGAAGCTAGATTTGGTACAGAAGCTTATCATTATTATGATATTGGTAGTGGTTCCCATGATTTGAGGGGATTGGGGAAAAGATCCACAGAGTGGGATTTGAATGAGTGGAGATGGGATGGTGATATGTTCTTAGCTAGCCGGTTGAATCCGGTGGCGGCTGCTGGTGTGGGGCAGCAATTTTTCCCTCTTGGGTCCGGGATCCCTGTTGCTGTGGTTGGGGGTTCCGGTTCCCCCAATGGTAATTCTTCCTGTTCCGAGGAAGCGGATATTGAGAATAAAAAAAGGAACAAGGAAGGGGAGAGGAAAAGGAGGGTGATTGTGTTGGAGGATGATGGGTTGAATGAGGAAGCAGGTGCCCTTAGCTTAAAGCTTGGTGGTCTTGGAGAACATTTGGCAGGTAGGGAGGTTGCGAGCTGGGATGGTGTGAATGGCAAGAAAAGTAGAGTGGGTGGAGGTACTTCGAATCGAGCTGTTTGTCAGGTGGAGGATTGTGGTGCCGATCTGACCAAAGCTAAAGATTATCACCGCCGTCATAAAGTTTGTGAACTTCACTCCAAGGCTACTAATGCACTTGTGGGAAATGCAATGCAGAGATTCTGTCAACAATGCAGTAGGTTTCACTTGCTTCAAGAGTTTGATGAAGGAAAGAGAAGCTGCCGAAGACGACTGGCAGGCCATAATAAACGCAGAAGGAAAACAAATCAAGAAGCTGTTCCAAATGGAAGTGCACTCAATGATGATCAGACTAGCAGTTATCTGTTGATAAGTTTATTGAAAATACTTTCAGATATGCGAACTGAGAGGGCAAATCAAACTACAGAGCAGGATGTGCTAACTCATCTTCTAAGGAGTCTTGCTAGTCAGAATGGTGAACAAGGGGGCAAGAACTTGTCAAACCTTTTGCGGGAACCAGAGAATTTTTTGAAAGAGGGGGGTTCATCTGGGAAGTCAGAGCTGGTTTCAACTTTATTATCCAATGGTTCTCAAGGCTCTCCAACTGATATAAGACAGCATCAAACAGTATCTATGAGTAAAATGCAACAGCAAGTGATGCTTATACATGATGCTAGGGTTACTGATCATCAAACTATGTCTTCTGCAAAGCCCAGCATTACGAACAGCCCTCCAGCTTACTCAGAAGCCCGGGGCAGTTCTGCTGGACAGGTCAAGATGAATAATTTTGATTTGAATGATATATATATTGACTCAGATGATGGAATTGAAGATGTAGAAAGATTGCCCATCTCCACAAATCATGGGACTAGCTCTCTTGACTACCCATGGGCACAACAAGATTCTCATCAGTCCAGTCCACCTCAAACAAGTAGAAACTCAGATTCTGCTTCTGCCCAGTCCCCTTCTAGTTCTAGTGGAGAAGCGCAGAGCCGCACAGATCGAATTGTTTTCAAACTCTTTGGTAAAGAGCCAAATGATTTCCCTCTTGTACTTAGAGCACAGATTCTTGACTGGTTATCCCACAGTCCTACTGATATTGAGAGCTACATACGGCCTGGTTGTATTGTTTTGACCATTTATCTGCGTCAGGACGAGGTTGTGTGGGATGAGCTTTGCTACAATCTGACTTCCAGTTTGAATAGGCTGCTGAATGTTTCAGATGATACTTTTTGGAGAACTGGATGGGTTCACATCAGGGTGCAGCATCAGATAGCCTTCATTTTCAATGGTCAAGTTGTCATTGATAAATCCCTACCTTTCAAAAGTAACAATTATAGCAAGATTATGAGTGTCAGTCCAATTGCTGTATCAGCATCGAGGAGAGCTCAATTTTCGGTTAAGGGTGTCAACCTGATACGCTCTGCCACTAGGTTAATATGTGCTTTAGAAGGGAAATATCTTGTTTGTGAAGATGCTCATGAGTCAATGGATCAACAATCCAAGGAGCTTGATCAGATCCAGTGCATCCAGTTTTCATGCTCTGTCCCTGTAATGAATGGAAGAGGATTTATTGAGATTGAGGACCAGGGTTTGAGTAGCAGCTTTTTTCCTTTTATAGTCGTCGAGGAGGATGTTTGCTCAGAAATCTGTTTGCTTGAGCCTCTACTAGAATTAAGTGAAACTGATCCAGATACTGATGGGACTGGAAAAATTGAAGCTAAAAGTCAAGCCATGGATTTCATTCATGAAATGGGTTGGCTTCTTCACAGAAACCAATTGACATCTAGGATGGCTCACTTGAAATCTAGTGCAGAACTCTTTCCATTAAAACGGTTCCAGTGGCTCATAGAGTTCTCTATGGATCATGATTGGTGTGCAGTGGTGAAAAAGCTATTGAACCTGCTGCTTGATGGAACTGTGAATTCAGGAGATCACCCATCCATGTATGTTGCACTTTCAGAGATGGCCCTCCTTCACAGAGCTGTAAGGAGAAATAGCAAGCAGTTAGTGGAGCTGCTTTTGAGATATGTTCCTGAGAATGTTTCTGATAAAGTAGGAACTGAAAACAAGGCAGTAGTTGATAGAGAGAATAAGAGCTTCTTGTTTAGACCTGATGTTGCTGGTCCCGCTGGTTTGACACCTCTCCATATAGCAGCTGGGAAAGATGGTTCTGAGGATGTACTGGATGCTTTAACTAATGATCCTTGCATGCTGGGAATCGAAGCGTGGAAGAATGCTCGTGACAGCACAGGCTCCACGCCTGAGGATTATGCACGCTTACGTGGCCATTATACTTACATTCACTTAGTGCAGAAGAAAATTAATAAGAGACAAGGAGCACCTCATGTGGTGGTTGAGATTCCCAGCAATGTGACAGAAAGCACTACAAACCAGAAGCAAAATGAGTCATCCACTACCTTTGAGATCGGAAAGGCTAAAGTAAAACATGGCCAAGGTCTCTGCAAAGTTTGTGATACTAAATTGTCTTGTAGAACTGCAGTAGGCAGGTCTTTGGTATATAGACCTGCAATGCTCTCAATGGTGGCCATTGCAGCAGTCTGTGTTTGTGTGGCCCTTCTGTTTAAGTCCTCACCGGAAGTTTTATATGTATTCCAACCCTTCCGATGGGAGTCATTGGATTTCGGTACATGCTAA 3054 0.4371 MEARFGTEAYHYYDIGSGSHDLRGLGKRSTEWDLNEWRWDGDMFLASRLNPVAAAGVGQQFFPLGSGIPVAVVGGSGSPNGNSSCSEEADIENKKRNKEGERKRRVIVLEDDGLNEEAGALSLKLGGLGEHLAGREVASWDGVNGKKSRVGGGTSNRAVCQVEDCGADLTKAKDYHRRHKVCELHSKATNALVGNAMQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNKRRRKTNQEAVPNGSALNDDQTSSYLLISLLKILSDMRTERANQTTEQDVLTHLLRSLASQNGEQGGKNLSNLLREPENFLKEGGSSGKSELVSTLLSNGSQGSPTDIRQHQTVSMSKMQQQVMLIHDARVTDHQTMSSAKPSITNSPPAYSEARGSSAGQVKMNNFDLNDIYIDSDDGIEDVERLPISTNHGTSSLDYPWAQQDSHQSSPPQTSRNSDSASAQSPSSSSGEAQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPTDIESYIRPGCIVLTIYLRQDEVVWDELCYNLTSSLNRLLNVSDDTFWRTGWVHIRVQHQIAFIFNGQVVIDKSLPFKSNNYSKIMSVSPIAVSASRRAQFSVKGVNLIRSATRLICALEGKYLVCEDAHESMDQQSKELDQIQCIQFSCSVPVMNGRGFIEIEDQGLSSSFFPFIVVEEDVCSEICLLEPLLELSETDPDTDGTGKIEAKSQAMDFIHEMGWLLHRNQLTSRMAHLKSSAELFPLKRFQWLIEFSMDHDWCAVVKKLLNLLLDGTVNSGDHPSMYVALSEMALLHRAVRRNSKQLVELLLRYVPENVSDKVGTENKAVVDRENKSFLFRPDVAGPAGLTPLHIAAGKDGSEDVLDALTNDPCMLGIEAWKNARDSTGSTPEDYARLRGHYTYIHLVQKKINKRQGAPHVVVEIPSNVTESTTNQKQNESSTTFEIGKAKVKHGQGLCKVCDTKLSCRTAVGRSLVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFQPFRWESLDFGTC* 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1348 1017 SUPERFAMILY SBT domain 158 238 IPR036893 GO:0003677|GO:0005634
Lan4g1348 1017 SUPERFAMILY Ankyrin repeat 772 901 IPR036770 -
Lan4g1348 1017 Gene3D - 151 221 IPR036893 GO:0003677|GO:0005634
Lan4g1348 1017 MobiDBLite consensus disorder prediction 361 386 - -
Lan4g1348 1017 Pfam SBP domain 160 233 IPR004333 GO:0003677
Lan4g1348 1017 Gene3D - 758 919 IPR036770 -
Lan4g1348 1017 MobiDBLite consensus disorder prediction 78 99 - -
Lan4g1348 1017 MobiDBLite consensus disorder prediction 308 342 - -
Lan4g1348 1017 MobiDBLite consensus disorder prediction 417 463 - -
Lan4g1348 1017 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 19 1016 - -
Lan4g1348 1017 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 19 1016 IPR044817 GO:0003677
Lan4g1348 1017 MobiDBLite consensus disorder prediction 224 245 - -
Lan4g1348 1017 MobiDBLite consensus disorder prediction 316 342 - -
Lan4g1348 1017 ProSiteProfiles Zinc finger SBP-type profile. 157 234 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1348 Lan-Chr4 22391389 22397339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1348 26 1016 SBP-box Gene Family AT3G60030 54.303 0.0 971
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lan4g1348 SBP 5.1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1348 - - lang:109336004 1759.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g1348 4 22391389 22397339 Lan4g1348 4 22391389 22397339 ECH
Lan8g0386 8 6026413 6033111 Lan4g1348 4 22391389 22397339 LSH
Lan20g0559 20 4235381 4241916 Lan4g1348 4 22391389 22397339 LSH