Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1347 ATGTTGAAAGGGAAAGTTCTTATATCTGGTGTTTCCATCATCCTAGTGGTGGGTGTTGTAATTGGAGTTGTAGTTGTTGTGAAGAATAACAATGGCCCTACTGAAAATCCTGAAGTTCAAGCTCATCAAAAACAGGTGAAGGCAATTTGCCAGGATACTGAAGACCCTAAACTCTGCTTTGACACTCTCAACAAAGTGAAACCTGCAAATGGCACTGATCCAAAGGCTTATATAGCAGCCTCGGTGCAATCGATCGCTGAGAGTGTTATAAAGTCTTTTAACATGAGTGATAGGCTCTTTGTGGAGCATGGTAAAGATGACAAAAAAGGGTTAAAAATGGCTCTTGAAGATTGCAAGGATTTAATGGAATTCGCCATGGATAGCATAGAGGCTTCAATTAACATGGTGCAAAACAATAACATCCAAGCAGTGCATGATCAAACACCAGACTTCAGGAATTGGTTGAGTGCTGTTATTTCATATCAAGAGTCATGCATGGATGGGTTTGATACTGGGAAAGATGGAGAAGAAAAAGTTAAGGAACAAATGCACTCAGAAAGTTTGGACATAATGGGAAGGCTAACTGGGATAGCCCTTGATATTGTTAGTGACATGGCCAAGATTCTTCAGGAATTTGATTTGAAGTTGGATTTAAAACCCGCTTCCCGACGCCTTTTGGCTGAGGATATTGATGATGAAGGATTTCCAACTTGGTTTTCAGCCACAGATCGCCATCTCTTAGCTAAGGGGAAAAAGGGACAAGGGCCCAAGCCAAATGTTGTGGTAGCACAAGATGGGAGTGGTCAATTTAAGACCATTAAGGAGGCTATTGAGTCTTACCCTAAGGACTTGAAGGGTAGATATATTATTTATGTTAAGGCTGGTGTGTATGATGAGTACATCCTTATTCCTAAGAAATCAGCAAATATTCTCATGTATGGTGATGGCCCTGCAAAGACCATTGTCACTGGTCGCAAATGCTTTAGAGATGGTATCAAGACAATGAACACTGCCACCTTTGCCAACACTGCACCAGGATTCATTGCTAAATCAATGGCTTTCGAGAACACAGCTGGTGCTGATGGTCACCAAGCAGTGGCACTCAGAAACCAAGGAGACATGTCAGCGTTCTTCGATTGTGCCATGCACGGTTACCAGGACACACTATACGTCCAAACAAATCGCCAATTCTACCGCAACTGCGAAATCTCAGGCACCATAGACTTCATCTTTGGTTCCTCAGCCACCTTGATCCAAAGCTCCAGAATCATAGTTCGCAAGCCTGGGCCTAATCAGTTCAATACTGTGACTGCAGATGGAACAAAACAAAGAAACATGGCAACAGGAATTGTTATCCAAAACTGCGAGATAGTCCCAGAACAAGAACTCTTCCCTGTAAGATTTGATTTCAAATCTTACTTAGGAAGACCATGGAAAGATTATGCAAGAACTGTTATTATGGAATCAAACATAGGTGACTTTCTTAATCCAGAAGGGTGGACCCCATGGAGTGGAACCATATTCCTTGACACATTGTATTATGCTGAGTATGCAAACACTGGACCTGGTTCAAATCTTTCAGGAAGGGTCAAATGGAAGGGTTACCATCCAAATATTCCTAAGGATGAAGCTGCTAGATTCACTGCTGGACAGTTCCTTAGAGCTGGAGAATCTGGAAGAGCTGAAGATTGGTTAGATGCTACTGGCATTCCTTATGCTGTTGGCTTCACCAAGTAA 1737 0.4226 MLKGKVLISGVSIILVVGVVIGVVVVVKNNNGPTENPEVQAHQKQVKAICQDTEDPKLCFDTLNKVKPANGTDPKAYIAASVQSIAESVIKSFNMSDRLFVEHGKDDKKGLKMALEDCKDLMEFAMDSIEASINMVQNNNIQAVHDQTPDFRNWLSAVISYQESCMDGFDTGKDGEEKVKEQMHSESLDIMGRLTGIALDIVSDMAKILQEFDLKLDLKPASRRLLAEDIDDEGFPTWFSATDRHLLAKGKKGQGPKPNVVVAQDGSGQFKTIKEAIESYPKDLKGRYIIYVKAGVYDEYILIPKKSANILMYGDGPAKTIVTGRKCFRDGIKTMNTATFANTAPGFIAKSMAFENTAGADGHQAVALRNQGDMSAFFDCAMHGYQDTLYVQTNRQFYRNCEISGTIDFIFGSSATLIQSSRIIVRKPGPNQFNTVTADGTKQRNMATGIVIQNCEIVPEQELFPVRFDFKSYLGRPWKDYARTVIMESNIGDFLNPEGWTPWSGTIFLDTLYYAEYANTGPGSNLSGRVKWKGYHPNIPKDEAARFTAGQFLRAGESGRAEDWLDATGIPYAVGFTK* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1347 578 Pfam Plant invertase/pectin methylesterase inhibitor 45 201 IPR006501 GO:0004857
Lan4g1347 578 PANTHER PECTINESTERASE 4 576 - -
Lan4g1347 578 TIGRFAM PME_inhib: pectinesterase inhibitor domain 27 201 IPR006501 GO:0004857
Lan4g1347 578 CDD PMEI-like_3 48 207 - -
Lan4g1347 578 PANTHER PECTINESTERASE 4 576 - -
Lan4g1347 578 SUPERFAMILY Pectin lyase-like 254 573 IPR011050 -
Lan4g1347 578 Gene3D Invertase/pectin methylesterase inhibitor family protein 40 206 IPR035513 -
Lan4g1347 578 ProSitePatterns Pectinesterase signature 2. 403 412 IPR033131 -
Lan4g1347 578 Gene3D - 255 576 IPR012334 -
Lan4g1347 578 Pfam Pectinesterase 259 554 IPR000070 GO:0030599|GO:0042545
Lan4g1347 578 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 43 205 IPR035513 -
Lan4g1347 578 SMART PMEI_2 41 201 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1347 Lan-Chr4 22381471 22383963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1347 3 576 Carbohydrate Esterase AT3G05610 39.378 1.37e-141 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1347 K01051 - gmx:100775246 858.211
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g1347 4 22381471 22383963 Lan4g1347 4 22381471 22383963 ECH