Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1343 ATGGGAAGATACTCTTGCTGTTACAAAGAGAAGCTTAGGAAGGGTCTCTGGTCTCCTGAGGAGGATGTAAAACTTGTAAACCATATTACTAAGCATGGTCATGGATGTTGGAGCTCTGTGCCTAAGCAAGCAGGTTTGCAAAGATGTGGCAAGAGTTGTAGGCTAAGGTGGTTAAACTACTTAAGGCCTGATTTAAAGAGAGGTACATTCTCACAAGAAGAAGAAAATCTTATACTTGAACTTCATGCAGTATTAGGGAACAGATGGTCTCAAATTGCGGCTCAATTACCAGGGAGGACTGATAATGAGATAAAGAATCTGTGGAACTCTTGCCTGAAGAAGAGACTGAGGCAAAGTGGTATTGATCCTGTTACACATAAACCACTATCTGAGGTTGAAAATGGAGAGGATAATAGTAGCAGCTTAGATAAAGCACCAGAAGTATCTAATGAATTAAACCTCCTGAAATCAGAAAGCTCAAAATCAGATGCAGCTTCAATCTCTCCAAAAGCCTATGCAACTGAGATGGAAAGTTCTTCTCACAGCTCCAAGTTTTACTTCAAAAGTGACACCAATATAATAACCAATAATTCTAGCAAAGACTTGTTCCAAGACAGGTTTATGACCAATTGCCATTCCTCTGATTTGATGAGAAATTTTCCACATCAAATGAGTTATGCATCCACTGACTATATCCCAAATGATTCAAACTCTAGTCATTGGTTCAGCCAAACTTCAAGGCCTTTTGATATATACTCTGAATATCCATTCAATGCCAATTCTATTCTTACACCTACAACAAGCATGTTTCTTCCTACTTCCTTTAACTACAACCCTTCACTTGTTGTTTCCTCTGATAATATTTCTACACCTTATGGATCCCATTACTGGGAAGCCAGTGCCTCCAACAATAGCAATAGCAGCAATGGGAGTAATAGCAGCACAGAGTTAAGTAGCAGTCCTTTAAATATACATAATAGCACCTTTTCTTCTTGGGGAATGGGAGATTGTAGCACCCCTACTAAAGAGGCACAAGTTCATATGCTGGAGAACCAGACAGAAGAAGCAAAGTGGAATGAGTACCTGCATAACCCAATGTCAATGCTGGCTTCTATGCAAAATCAATATCAAGCTCCTGAAACTTTATGCAATGAGATAAAACCCACCATGAATTTTATGCATGAAACTTTAGGGGCTATATTACCTCATAGTCATACCAAGCAGCAAGAACTCTCACAAAGTTTTAGTATCTTTTCCAAGGACATTCAAAAGCTTACATCAGCCTTTGGACACATGTAG 1299 0.3911 MGRYSCCYKEKLRKGLWSPEEDVKLVNHITKHGHGCWSSVPKQAGLQRCGKSCRLRWLNYLRPDLKRGTFSQEEENLILELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKRLRQSGIDPVTHKPLSEVENGEDNSSSLDKAPEVSNELNLLKSESSKSDAASISPKAYATEMESSSHSSKFYFKSDTNIITNNSSKDLFQDRFMTNCHSSDLMRNFPHQMSYASTDYIPNDSNSSHWFSQTSRPFDIYSEYPFNANSILTPTTSMFLPTSFNYNPSLVVSSDNISTPYGSHYWEASASNNSNSSNGSNSSTELSSSPLNIHNSTFSSWGMGDCSTPTKEAQVHMLENQTEEAKWNEYLHNPMSMLASMQNQYQAPETLCNEIKPTMNFMHETLGAILPHSHTKQQELSQSFSIFSKDIQKLTSAFGHM* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1343 432 PANTHER MYB DOMAIN PROTEIN 55 1 426 - -
Lan4g1343 432 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lan4g1343 432 PANTHER HOMEODOMAIN-RELATED 1 426 - -
Lan4g1343 432 CDD SANT 17 61 IPR001005 -
Lan4g1343 432 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lan4g1343 432 MobiDBLite consensus disorder prediction 122 147 - -
Lan4g1343 432 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lan4g1343 432 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lan4g1343 432 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lan4g1343 432 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lan4g1343 432 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Lan4g1343 432 SMART sant 13 63 IPR001005 -
Lan4g1343 432 SMART sant 66 114 IPR001005 -
Lan4g1343 432 Gene3D - 69 138 - -
Lan4g1343 432 CDD SANT 69 109 IPR001005 -
Lan4g1343 432 Gene3D - 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1343 Lan-Chr4 22293664 22295584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1343 1 159 MYB Transcription Factor Family AT4G01680 76.730 1.75e-88 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan4g1343 Myb_DNA-binding 4.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1343 K09422 - gmx:100815881 577.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g1343 4 22293664 22295584 Lan4g1334 4 22179756 22182232 ECH
Lan4g1343 4 22293664 22295584 Lan4g1343 4 22293664 22295584 ECH
Lan20g0571 20 4394910 4396815 Lan4g1343 4 22293664 22295584 LSH
Lan4g0936 4 11754507 11756457 Lan4g1343 4 22293664 22295584 PCT
Lan4g1343 4 22293664 22295584 Lan4g0936 4 11754507 11756457 PCT