Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1335 ATGGGTATTAAGGGTTTAACGAAGCTTTTGGCTGACAATGCCCCAAAATCAATGAAGGAGAACAAATTTGAGAGCTATTTTGGCCGAAAGATCGCCATTGACGCTAGCATGAGCATTTATCAGTTTCTTATTGTAGTGGGAAGAATTGGAACTGAGACTCTCACTAATGAAGCTGGTGAAGTTACTAGTCATTTGCAAGGGATGTTTTCACGCACAATCAGACTTCTAGAAGCTGGGATCAAGCCAGTATATGTTTTTGATGGTAAGCCACCCGATTTGAAGAAGCAAGAGTTGGCAAAACGTTACTCAAAGAGGGCTGAGGCTACTGAGGGTTTGACAGAAGCCATAGAGGCTGACAATAAGGAAGACATTGAGAAATTCAGTAAACGGACAGTGAAGGTTACAAAACAGCATAATGATGACTGCAAAAGACTTCTAAGACTCATGGGAGTGCCTGTTGTTGAGGCACCCTCAGAAGCAGAGGCACAGTGCGCTGCACTCTGCAAAGCTGGAAAGGTTTATGCTGTGGCTTCTGAAGACATGGATTCCTTAACATTTGGAGCTAAAAAATTTCTTCGCCACTTAATGGATCCTAGCTCGAAAAAAGTTCCAGTGATGGAATTTGAAATTGAAAAGATTTTGGAGGGGCTAAATATGACCATGGACCAATTTATCGACTTGTGCATTCTTTCTGGATGTGACTATTGTGAAAGCATTCGAGGGATTGGAGGAATTTCGGCCTTGAAGCTCATACGTCAGCATGGCTCTATCGAGAATATACTGGAGAACATAAATAAAGAGAGGTACCAGATACCAGATGATTGGCCATATCAAGAGGCTCGGCGCCTTTTTAAAGAACCAACAGTCTTGATTGAAGAAGAGGAACTTAATCTTAAGTGGTCTGCTCCAGATGAAGAAGGGTTAATATCATTTCTGGTAAATGAGAATGGATTCAACAATGACAGGGTGACAAAGGCAATAGAAAAAATTAAAGCAGCAAAGAACAAGTCATCACAGGGCCGATTGGAATCATTTTTTAAGCCGACTGCAAATCCATCTGTACCTATCAAACGGAAGGAAACACCAGAGAATAATGCTAAAGAGACTAACAAAAACAAAAAGACCAAGGGCAGTGGTGGTAGGAAGAAGAAATAG 1155 0.4139 MGIKGLTKLLADNAPKSMKENKFESYFGRKIAIDASMSIYQFLIVVGRIGTETLTNEAGEVTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRAEATEGLTEAIEADNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKVYAVASEDMDSLTFGAKKFLRHLMDPSSKKVPVMEFEIEKILEGLNMTMDQFIDLCILSGCDYCESIRGIGGISALKLIRQHGSIENILENINKERYQIPDDWPYQEARRLFKEPTVLIEEEELNLKWSAPDEEGLISFLVNENGFNNDRVTKAIEKIKAAKNKSSQGRLESFFKPTANPSVPIKRKETPENNAKETNKNKKTKGSGGRKKK* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1335 384 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
Lan4g1335 384 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 82 101 IPR006084 -
Lan4g1335 384 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 146 163 IPR006084 -
Lan4g1335 384 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 167 187 IPR006084 -
Lan4g1335 384 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 224 239 IPR006084 -
Lan4g1335 384 PANTHER FLAP ENDONUCLEASE 1 1 375 - -
Lan4g1335 384 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 219 354 IPR036279 -
Lan4g1335 384 ProSitePatterns XPG protein signature 2. 150 164 IPR019974 GO:0016788
Lan4g1335 384 Pfam XPG N-terminal domain 1 108 IPR006085 GO:0004518
Lan4g1335 384 CDD PIN_FEN1 4 332 - -
Lan4g1335 384 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 375 IPR006084 -
Lan4g1335 384 CDD H3TH_FEN1-Euk 222 290 - -
Lan4g1335 384 SUPERFAMILY PIN domain-like 2 234 IPR029060 -
Lan4g1335 384 MobiDBLite consensus disorder prediction 360 375 - -
Lan4g1335 384 Hamap Flap endonuclease 1 [fen]. 1 347 IPR023426 GO:0016788
Lan4g1335 384 Gene3D - 10 222 - -
Lan4g1335 384 SMART xpgn3 1 108 IPR006085 GO:0004518
Lan4g1335 384 Gene3D - 223 286 - -
Lan4g1335 384 SMART HhH_4 221 254 IPR008918 GO:0003677|GO:0003824
Lan4g1335 384 MobiDBLite consensus disorder prediction 336 384 - -
Lan4g1335 384 Pfam XPG I-region 150 234 IPR006086 GO:0004518
Lan4g1335 384 SMART xpgineu 147 219 IPR006086 GO:0004518
Lan4g1335 384 ProSitePatterns XPG protein signature 1. 80 94 IPR019974 GO:0016788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1335 Lan-Chr4 22202155 22207939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1335 1 361 Core DNA Replication Machinery Family AT5G26680 85.319 0.0 650
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1335 K04799 - gmx:100792878 651.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g1335 4 22202155 22207939 Lan4g1335 4 22202155 22207939 ECH
Lan20g0585 20 4481833 4533016 Lan4g1335 4 22202155 22207939 LSH