Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1334 ATGGGAAGACATTCTTGTTGCTATAAGCAGAAGCTGAGGAAAGGTCTCTGGTCTCCAGAGGAAGATGAGAAGCTTCTCAATTACATAACCAACCGTGGTCATGGATGTTGGAGTTCAGTTCCCAAACTAGCTGGTTTGCAGAGGTGTGGAAAGAGTTGCAGGTTGAGGTGGATTAATTACTTGAGGCCTGATTTGAAGAGAGGAGCATTCTCACAGCAAGAAGAGAATTTAATAATTGAACTCCATGCAGTCCTTGGCAACAGGTGGTCTCAGATTGCAGCACAATTACCAGGAAGAACGGACAATGAGATTAAGAACCTATGGAACTCATGCCTGAAGAAGAAGCTCAGGCAAAGAGGTATTGACCCAAACACTCACAAACCAATCTCTGAGGTTGAGAATGACAAAGACAAGCCAACTATAGCAGACAAAAGCAATCACAAATTAGCCTCAGTGGGATCCAATGAAGTAAGTAGTTTTGTTGAGCCATCAAAACCCAGCAAAACTTACATTCCTTCAGAGAGATATAGCCCTCTTGAAGTCTCCACTAGTTCCAAAATCAACAACAGTTGCAACAGTAACTTAACCAGCACCACAGCTACACAAGAATTATTTCTAGACTCCATCAACAGTTGCAGACCATCTGATATAGTAGGAGGAGGATATTTCTCATTCCAAAACTTAAACTATGGACCAAACATGAATAACACTTCTCTTTACATGTCAGACCTTAATTCTAGCATAACTTCAACTATGCTCAATAATTCTGTGTCTACCTCAGTTTTCCAAACTCCAATACATGTAAAGCCAACTGTTACACTCCACTCTTATAACAACTTCAACAAGAATCCTTCTATATCCTCTGGTGACATTGATGGGAACAGTAATAGCACTATGCAGTTTCAAATCAACACAAACTTACTTGGAAACAATAGCAATATAACATGGGGGGTGGAAGAATCTGTGAAGGCTGATAAAGATGCTCATGAACATTTACCATTACAAGGAGCGGAACAAGAAGAGATAAAGTGGTCTGAATATCTTAACACCCCATTTCTTCTTGGAAACACAGTGCAGAATCAGACTTCTCAGTCTATCTACATTGATGTGGTTAAACCAGAAAGTGGTTTCATAACAGAAGAGTTAAATACTAGTTGGCAACAACATAACCAGCAGCACCAACCAGCTTTTCAACTTTCAGATATATATAATAAAGATCTGCAGAGATTTTCAGTGGCTTTTGGACAAACCCTCTAG 1257 0.3986 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITNRGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPISEVENDKDKPTIADKSNHKLASVGSNEVSSFVEPSKPSKTYIPSERYSPLEVSTSSKINNSCNSNLTSTTATQELFLDSINSCRPSDIVGGGYFSFQNLNYGPNMNNTSLYMSDLNSSITSTMLNNSVSTSVFQTPIHVKPTVTLHSYNNFNKNPSISSGDIDGNSNSTMQFQINTNLLGNNSNITWGVEESVKADKDAHEHLPLQGAEQEEIKWSEYLNTPFLLGNTVQNQTSQSIYIDVVKPESGFITEELNTSWQQHNQQHQPAFQLSDIYNKDLQRFSVAFGQTL* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1334 418 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lan4g1334 418 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lan4g1334 418 MobiDBLite consensus disorder prediction 119 144 - -
Lan4g1334 418 CDD SANT 17 61 IPR001005 -
Lan4g1334 418 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lan4g1334 418 Gene3D - 68 145 - -
Lan4g1334 418 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Lan4g1334 418 SMART sant 13 63 IPR001005 -
Lan4g1334 418 SMART sant 66 114 IPR001005 -
Lan4g1334 418 MobiDBLite consensus disorder prediction 147 166 - -
Lan4g1334 418 PANTHER MYB DOMAIN PROTEIN 55 1 411 - -
Lan4g1334 418 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lan4g1334 418 Gene3D - 11 67 - -
Lan4g1334 418 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lan4g1334 418 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lan4g1334 418 MobiDBLite consensus disorder prediction 119 173 - -
Lan4g1334 418 CDD SANT 69 109 IPR001005 -
Lan4g1334 418 PANTHER HOMEODOMAIN-RELATED 1 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1334 Lan-Chr4 22179756 22182232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1334 1 418 MYB Transcription Factor Family AT1G09540 49.882 1.71e-123 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan4g1334 Myb_DNA-binding 5.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1334 K09422 - gmx:100788976 502.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g1334 4 22179756 22182232 Lan4g1334 4 22179756 22182232 ECH
Lan4g1343 4 22293664 22295584 Lan4g1334 4 22179756 22182232 ECH
Lan8g0372 8 5864237 5866363 Lan4g1334 4 22179756 22182232 LSH
Lan20g0588 20 4565430 4567296 Lan4g1334 4 22179756 22182232 LSH
Lan4g0929 4 11674731 11676524 Lan4g1334 4 22179756 22182232 PCT
Lan4g1334 4 22179756 22182232 Lan4g0929 4 11674731 11676524 PCT