Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1332 ATGCCTCTTTATGAGTTATATCGGCTTTCTAGAGAGAAGCTTGATAAAGAGGTTAGCAACACATGTGCAGTTGAACAATCTCAATCTTCCTTGCCTGAGACTGATTTCTTTGAGCTGGTTTGGGAAAATGGTCAGATTTCAACACAGGGTCAGTCCAGAAAGAGCCCTTCTTCTGGAAGGAGTTTGCCGTCTCATTGTGTACCGTCTCATAGTCCGAAGGGCCGAGATAAAGATGAAGGCGGATATGCTATGAATACAAGGATGGGAAAGGGAAAGTTTGGGGATTTTGATTCTGGGTTGAATGAAATCCCTATGTCAGTCCCATCACATGAAGTGGATTTGAGTCAAGATGGAGACATGATGCATTGGTTGGATTACACAATGGATGGATCTTTGCAACATGACTATGGTTCTGATTTCTTACATGAACTGTCCGATGTCACAGAAAATGACCTCCCGAAATCAAATAATTTTGCCCTTGTGGATAGAAGAAGCAATGGTACTAATCAGGTATTTAGGGACTCTTGTAAAAGTTCTGCAAGTTATGTTGCTGGTTTAGAACAAGGGAATGTTTCTAAGGGTTCTTCAACTGGAGATGTTGACATTTCTGGGCCTAAAGCTAGTATCAATCAGCTATATCTGCCATCATCACATCAATGTCAAACACCATTTGCATCTGTTAGATCCAAAGTATCAGAGATAATTGAGAACAATACAAATAATGCTACTCAGAATGTACCTCGTGGCGAAATAACTCAGATTGCGTCTTCCTCTAGTGATTTTTGTAGCTTAAAGATGCAGAAGCAGGATCCAGTTCTTCCTAGCAATGGTTCCACAGTGATGAATTTCTCCCATTTTGCAAGGCCTGCTGGTATTAGCAGAACTAATCTTCAGAATGTTGGCTTGAAGTCTGATTTGTCTTCAGGAAGATTAGACAGTCAGGGAAATAAGAATAAAGGTGCAGCTACTACTAGCGGCTACCGTCCTGAATTATTAAGAGTGGATTCAAGTGGTGATTGTTCAAAGGAACCAACCATGCACTGCCAGCAGGTTGTGGAGCAATCCAAGGCTGATTTGAAACGGTTGGAGCCAAAATCTCGTGAACAGGAGGCTGCTGTAGTTTCTAAACAGTTGGACCCTGTTTGCAAAGAGAGTTCTAGTAAGGTTGACGAAACTTCCATTCAAGTTCTTGCTGAAAATGGCTCTAAAAAACAAATAGCTGTTGAAAAAAGTAAGGAGCCAGCAGTAGCACCACCCTCCATTTGTTCTGGCAATGGTGCAGACAGAGTTTTGGAAGAGCCAAATCAAAATTTGAAGCGGAAAAGTAGAGACACTGAGGGCTCTGAGAGCCATAGTGAAGATGCTGAGGAAGAATCTGTGGGTCTTAAAAAGGCGGCTGCTGGACGAGGAGGTACAGGTATTAAGAGAAGCCGTGCGGCTGAAGTGCATAATCTATCCGAAAGGAGGCGAAGAGACAGGATCAATGAGAAGATGCGTGCATTACAAGAACTCATACCAAATTGCAACAAGGTGGATAAAGCTTCAATGCTGGATGAGGCAATTGAGTATCTTAAAACACTTCAGCTCCAAGTTCAAATGATGTCAATGGGAGCTGGTTTATATATGCATCCAATGATGATACCTGCGGGAATGCAGCACATGCATGCACCACATATGGCTCCCTTTTCACCTATGGGTGTTGGCATGCAAATGGGGATGGGTATGGGTTATGGGATGGGTATGCCTGACATGAATGGTGGTTCTTCTAGATTCCCAATGATTCACATGCCCCAAATGCAAGGAACTCATATACCTGCTGCACATGTATCTGGACCCACCGCTTTACATGGGATGGCAAGATCAAATCCTCAAGGATTTGGGCTTCCATGTCAAGGTCAGGGACTTCCCTTGCCGATATCACGTACTCCTGTTTTTCCTTTTTCAGTAGGGCCTTTTATGAACTCACCAACTCCGGTACAACATGCCGGTGGAACAGTAGCAGGACTTGCTGAAACTGGGAGCTCAGCTTCTTGCTTGAAAGACCCAATGCCAAATGTAGACCAACAAGTTAAGCAATGTAATGTAGCAGCAAGTCAGATGATGGCTAAACCTAACCAGTGTGAAGCAGCAACTATTGCATTTGAACAGTCAGCTTTGGTGCAAAATAGTGGTCATGCCTCTGATATTAATGACAGTGGAGCTGTTAATGCAAAGAACACAGTCTCATGA 2229 0.4325 MPLYELYRLSREKLDKEVSNTCAVEQSQSSLPETDFFELVWENGQISTQGQSRKSPSSGRSLPSHCVPSHSPKGRDKDEGGYAMNTRMGKGKFGDFDSGLNEIPMSVPSHEVDLSQDGDMMHWLDYTMDGSLQHDYGSDFLHELSDVTENDLPKSNNFALVDRRSNGTNQVFRDSCKSSASYVAGLEQGNVSKGSSTGDVDISGPKASINQLYLPSSHQCQTPFASVRSKVSEIIENNTNNATQNVPRGEITQIASSSSDFCSLKMQKQDPVLPSNGSTVMNFSHFARPAGISRTNLQNVGLKSDLSSGRLDSQGNKNKGAATTSGYRPELLRVDSSGDCSKEPTMHCQQVVEQSKADLKRLEPKSREQEAAVVSKQLDPVCKESSSKVDETSIQVLAENGSKKQIAVEKSKEPAVAPPSICSGNGADRVLEEPNQNLKRKSRDTEGSESHSEDAEEESVGLKKAAAGRGGTGIKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMMSMGAGLYMHPMMIPAGMQHMHAPHMAPFSPMGVGMQMGMGMGYGMGMPDMNGGSSRFPMIHMPQMQGTHIPAAHVSGPTALHGMARSNPQGFGLPCQGQGLPLPISRTPVFPFSVGPFMNSPTPVQHAGGTVAGLAETGSSASCLKDPMPNVDQQVKQCNVAASQMMAKPNQCEAATIAFEQSALVQNSGHASDINDSGAVNAKNTVS* 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1332 742 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 478 527 IPR011598 GO:0046983
Lan4g1332 742 PANTHER TRANSCRIPTION FACTOR PIF3 1 703 - -
Lan4g1332 742 MobiDBLite consensus disorder prediction 47 65 - -
Lan4g1332 742 SMART finulus 484 533 IPR011598 GO:0046983
Lan4g1332 742 MobiDBLite consensus disorder prediction 433 463 - -
Lan4g1332 742 CDD bHLH_AtPIF_like 478 540 - -
Lan4g1332 742 Gene3D - 474 536 IPR036638 GO:0046983
Lan4g1332 742 MobiDBLite consensus disorder prediction 304 323 - -
Lan4g1332 742 MobiDBLite consensus disorder prediction 405 493 - -
Lan4g1332 742 MobiDBLite consensus disorder prediction 47 88 - -
Lan4g1332 742 MobiDBLite consensus disorder prediction 304 343 - -
Lan4g1332 742 PANTHER TRANSCRIPTION FACTOR PIF3 1 703 IPR044273 GO:0003700|GO:0006355
Lan4g1332 742 Pfam Helix-loop-helix DNA-binding domain 482 528 IPR011598 GO:0046983
Lan4g1332 742 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 476 538 IPR036638 GO:0046983
Lan4g1332 742 MobiDBLite consensus disorder prediction 360 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1332 Lan-Chr4 22156148 22161192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1332 1 600 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 35.342 1.62e-69 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan4g1332 HLH 8.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1332 K12126 - gmx:100794974 904.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g1332 4 22156148 22161192 Lan4g1332 4 22156148 22161192 ECH
Lan20g0590 20 4585662 4590392 Lan4g1332 4 22156148 22161192 LSH