Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1324 ATGGGTGGTGATCTTAAAACTGAGTTATCTCAGAAAACTTCAATTTTTGGGATTAAGGTTTGGGAAATAATTGGAATTGCAGTTAGCTTTTCTATTATAGTGATCCTCTGTGTCATCTCACTTTGCCTTACTTCAAGGAAGAAATCTAGAAAGACTAGGAACAAGGTTCCAGTTACTCGAATACCGACAATCTCAAAGGAAATCAAGGAAGTGCAGGTTGAGCCAGTATCATCAAATGGATTTGTTCCTGGTAATGGAATACTTCTTACAATTCATGATAAGTCCAGTGGCAGAGAATCAGAGAAAGTTATGGTTCATTTAGGTGTAGGGAAGAGAAGGCATGGAGATAGTGGCAATCATTCGGATTCGTTTCATCAATCGGAGAAAAATGGAGGCGGATCACAGTCAGGGGAAGAAGGTAGCTATGGCAGTGTTAAAGTGTACAAGCCCTCTTCTTCATACCCTTTAACAGCTCCTTCACCTCTTTGTGGCCTTCCAGAATTCTCTCACTTGGGTTGGGGTCACTGGTTTACATTAAGGGATCTTGAACTTGCTACAAACCGTTTTTCGAAAGACAATGTCATCGGTGAGGGTGGATATGGAGTTGTTTATAAGGGACAGTTGATCAATGGGAATCAGGTGGCAGTTAAAAAGATACTCAACAACATTGGCCAAGCAGAGAAAGAATTTGGAGTGGAAGTTGAAGCTATTGGCCATGTCCGGCATAAAAATTTGGTTCGCCTTTTGGGATACTGCATTGAGGGTACTCACAGGATGTTAGTCTATGAGTTTGTCAATAATGGAAACTTAGAGCAATGGCTTCATGGAGCTATGCGCCATCATGGTTATCTTACCTGGGAAGCGCGTATCAAGATCCTCCTTGGCACGGCCAAAGCGCTCGCGTATTTGCATGAGGCAATTGAGCCAAAGGTGATACACCGAGATATCAAGTCAAGCAACATATTAATTGATGATGAATTCAACGCCAAAGTTTCTGATTTTGGCCTGGCCAAGTTACTTGGTGCTGGGAAGAGTCATGTTACCACCCGAGTAATGGGGACCTTTGGATATGTGGCTCCTGAATATGCAAATAGTGGCCTTTTAAATGAAAAGAGTGATGTATATAGCTTTGGTGTTGTGCTATTGGAAGCAATTAGTGGAAGAGATCCAGTTGATCATGGCCGTCCAATACAGGAAGTTAATCTGGTTGATTGGCTGAAGATGATGGTTGGAAACAGAAGATCAGAAGAAGTGGTGGATCCAAACATTGAGGTGAAACCATCAACCAGAGCTTTAAAACGAGTTCTCTTAACTGCTTTAAGATGTTTAGATCCAGATTCTGAGAAAAGACCCAAGATGGGCCAAGTTGTACGTATGCTTGAATCAGAGGAATACCCTTTACCAAGAGAGGACCGAAGGCAGTGGAGAAATCCTGGAGGTAGTACAGAAACTGAATCCCAGAAGGCTTATTCTGACACAGACAAGAGTGAGATTCAGTGTTCTAAATCAGAATGA 1515 0.4211 MGGDLKTELSQKTSIFGIKVWEIIGIAVSFSIIVILCVISLCLTSRKKSRKTRNKVPVTRIPTISKEIKEVQVEPVSSNGFVPGNGILLTIHDKSSGRESEKVMVHLGVGKRRHGDSGNHSDSFHQSEKNGGGSQSGEEGSYGSVKVYKPSSSYPLTAPSPLCGLPEFSHLGWGHWFTLRDLELATNRFSKDNVIGEGGYGVVYKGQLINGNQVAVKKILNNIGQAEKEFGVEVEAIGHVRHKNLVRLLGYCIEGTHRMLVYEFVNNGNLEQWLHGAMRHHGYLTWEARIKILLGTAKALAYLHEAIEPKVIHRDIKSSNILIDDEFNAKVSDFGLAKLLGAGKSHVTTRVMGTFGYVAPEYANSGLLNEKSDVYSFGVVLLEAISGRDPVDHGRPIQEVNLVDWLKMMVGNRRSEEVVDPNIEVKPSTRALKRVLLTALRCLDPDSEKRPKMGQVVRMLESEEYPLPREDRRQWRNPGGSTETESQKAYSDTDKSEIQCSKSE* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1324 504 ProSitePatterns Serine/Threonine protein kinases active-site signature. 311 323 IPR008271 GO:0004672|GO:0006468
Lan4g1324 504 Pfam Protein kinase domain 190 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan4g1324 504 MobiDBLite consensus disorder prediction 124 144 - -
Lan4g1324 504 CDD STKc_IRAK 195 461 - -
Lan4g1324 504 MobiDBLite consensus disorder prediction 459 478 - -
Lan4g1324 504 MobiDBLite consensus disorder prediction 111 144 - -
Lan4g1324 504 MobiDBLite consensus disorder prediction 488 504 - -
Lan4g1324 504 PANTHER OS01G0323000 PROTEIN 3 501 - -
Lan4g1324 504 Gene3D Phosphorylase Kinase; domain 1 172 264 - -
Lan4g1324 504 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 3 501 - -
Lan4g1324 504 Gene3D Transferase(Phosphotransferase) domain 1 265 473 - -
Lan4g1324 504 ProSitePatterns Protein kinases ATP-binding region signature. 195 218 IPR017441 GO:0005524
Lan4g1324 504 SMART serkin_6 189 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan4g1324 504 SUPERFAMILY Protein kinase-like (PK-like) 173 468 IPR011009 -
Lan4g1324 504 ProSiteProfiles Protein kinase domain profile. 189 468 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan4g1324 504 MobiDBLite consensus disorder prediction 459 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1324 Lan-Chr4 22059486 22063365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1324 17 463 Trihelix Transcription Factor Family AT1G70460 39.956 2.18e-93 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Lan4g1324 Pkinase 6.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1324 - - gmx:100787014 827.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g1324 4 22059486 22063365 Lan4g1324 4 22059486 22063365 ECH
Lan4g1324 4 22059486 22063365 Lan4g0918 4 11198801 11203895 PCT