Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1313 ATGGCATCATCTTCTGAACCAAACATTGATGATTCCACTAATTCAGACGCAACCTTACAACTATCGAAACACAGAAAAATCACACACAATCATAAACCTACCAATCAAAATTTCCTTAACCTAATCCCATGGAGATCCCAATTGGAGCAACAGATCTATTCCACCAACCTTGTCCAAGCCCTCCACCGCGCTCCTCCTTCCCCCGCCGCTCGTCAAGTTCGCGACACCGCCGATCGAATCCTCGCACGTGCCGCCAAGGGAAGAACACGATGGAGCCGCGCGATTCTCGTTTCTCCACGATGGAAGCTTCATAGGAATAAACTGAAGAAGGTAGAGAAGGGTTCGAATGGATTGAAGAAAATGAGGGTTACCGGAGGAGACCGGAAGAGAAAGAGGAGGTTACCGGCTGTGCAGAAGAAAGCGCGCGTTCTCAGCCGGTTGGTTCCAGGTTGCAAGAAAGTGTCGTTCCAGAACCTTCTAGAAGAAACTTCTGATTATATTTCGGCGTTGGAAATGCAAGTTAGAGCTATGACGGCTCTCACCGAGTTATTCGCTGGTCGAATGGTGTGTTAA 573 0.4834 MASSSEPNIDDSTNSDATLQLSKHRKITHNHKPTNQNFLNLIPWRSQLEQQIYSTNLVQALHRAPPSPAARQVRDTADRILARAAKGRTRWSRAILVSPRWKLHRNKLKKVEKGSNGLKKMRVTGGDRKRKRRLPAVQKKARVLSRLVPGCKKVSFQNLLEETSDYISALEMQVRAMTALTELFAGRMVC* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1313 190 PANTHER TRANSCRIPTION FACTOR BHLH150 18 186 - -
Lan4g1313 190 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 131 184 IPR036638 GO:0046983
Lan4g1313 190 CDD bHLH_AtIBH1_like 128 181 IPR044549 GO:0006355
Lan4g1313 190 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 18 186 IPR044660 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1313 Lan-Chr4 21942300 21943194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1313 37 177 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09250 46.452 2.10e-33 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1313 - - aprc:113873135 195.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0353 8 5646909 5657952 Lan4g1313 4 21942300 21943194 LSH
Lan20g0612 20 4835993 4836898 Lan4g1313 4 21942300 21943194 LSH
Lan16g1024 16 17448030 17449206 Lan4g1313 4 21942300 21943194 PCT
Lan4g1313 4 21942300 21943194 Lan16g1024 16 17448030 17449206 PCT