Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1312 ATGAAAGGCAAGGAGCGGAAAATGGTACCACTTCCATCACCACCCTCCTCAGTCAAGATTGAGGACTTTCATATCACCAATGCAACTTCTGCTGACGAGTCCATTGGAACCCACTTTTTTTCTAATGACTCAGACACATTCTACATCAAACTCACTAACTTGTTGGAATCCACTGGACTCACTCTAATTGTCAATGTCCGAGAAACATTGCTGGACTTGTACATATTTTACTTGGAGGTTACCAGAAGAGGAGGATTTCGTCAGGTTGGAAGAGAAAAGAAATGGGGTGAAGTTGTATCTGCCCTAAAATTGGATGGAAATAATGTGAATCTATCTGATCAAGTTGAAAAGCTATATGAAAATGTTCTTTATCAGTTTGAGCAATTGTATTTCTATAGGGTTCGTGCAAAGCAAGCTGATGCAGTTAACAAGACTGGAGGTCCACTTAAGAGGAAGTGGAGTACACTAGCTAGTTTATCTCCGTTAATGAATGTTCGAGATGGTCAGATGGCGACAAAGATGTGCAAGGACCGCTCTTGCCAAACCACAGCTCAAAGAAGGGCTGGATTTGTAGAACAGACAGTGGTTCTACCAGCAGTGGCAACCTCCAATGGCAGAAAAAAGAAACGTGCAGGTATTCCGCGGGGAAGGAGTGGATATCAGATTTTCCTCAATGAGGAATGTGCTCGATTGAAAACTTCTGGTCGTGTCTCAGGTGGCAGAACAATGATACGCATGGCTATTGATGCATGGAATAAGATGTCGGATACTGAGCAAAAGCCATATGTGGAGGAAAGCAAAAAGCACAAGGAAAAGTTAAAGGAAACAATGATCACTCCCAGTAAACAACAAAATACCATGGAAGAGAAGAGGCCTAATGTGTGTGGTGACTACCCCGTAACTTTGCAACCGGTGGCACATAACTCCCTTGACAGTAGAGCAGCATTTGGCTTAGCTCCTAAAATGACCGAAAAAGCACCCAAGAATGAAGAATCCGTTACTATATTCACTAGGTTTGCCCACTGA 1026 0.4288 MKGKERKMVPLPSPPSSVKIEDFHITNATSADESIGTHFFSNDSDTFYIKLTNLLESTGLTLIVNVRETLLDLYIFYLEVTRRGGFRQVGREKKWGEVVSALKLDGNNVNLSDQVEKLYENVLYQFEQLYFYRVRAKQADAVNKTGGPLKRKWSTLASLSPLMNVRDGQMATKMCKDRSCQTTAQRRAGFVEQTVVLPAVATSNGRKKKRAGIPRGRSGYQIFLNEECARLKTSGRVSGGRTMIRMAIDAWNKMSDTEQKPYVEESKKHKEKLKETMITPSKQQNTMEEKRPNVCGDYPVTLQPVAHNSLDSRAAFGLAPKMTEKAPKNEESVTIFTRFAH* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1312 341 Gene3D High mobility group box domain 201 294 IPR036910 -
Lan4g1312 341 SMART ARID_2 38 127 - -
Lan4g1312 341 ProSiteProfiles ARID domain profile. 41 131 IPR001606 GO:0003677
Lan4g1312 341 CDD HMG-box 213 277 - -
Lan4g1312 341 Pfam HMG-box domain 214 278 IPR009071 -
Lan4g1312 341 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 36 330 - -
Lan4g1312 341 PANTHER HMG (HIGH MOBILITY GROUP) BOX PROTEIN 36 330 - -
Lan4g1312 341 SUPERFAMILY ARID-like 40 132 IPR036431 GO:0003677
Lan4g1312 341 SUPERFAMILY HMG-box 201 277 IPR036910 -
Lan4g1312 341 SMART bright_3 42 132 IPR001606 GO:0003677
Lan4g1312 341 Gene3D - 20 147 IPR036431 GO:0003677
Lan4g1312 341 Pfam ARID/BRIGHT DNA binding domain 44 127 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1312 Lan-Chr4 21923901 21926823 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1312 43 278 ARID Transcription Factor Family AT3G13350 25.912 5.19e-13 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lan4g1312 ARID 1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1312 - - var:108325455 298.901