Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1305 ATGGGTAGCACTAGCAGGAACAGGAACAGGAATAAGAAGGAACAAGATGAAAACATGGAATTAGAAAAAGCTCGATTACTCAGTTTAGCCATTGATTTCGGTTTCGATCATAACTCAGCCGTCAAATGTTTGGACCGTCTTATCGATCTCTACGGTGATGATGGCCGAGATTTTATCACGGTGGAGCACTGCGGTGATGATTTTCTCACGGCTTTGGCGGAATCGATGGAAGCTATGGAGGAATGGGATGATGTGGAGGAGATGGAATCACAAGCTTGTGGAACTTTAACTGATATACTTGATCATTCTAGTGTTGCTAAATGTGGTGATGATGGACAGGATAATCATGATGCTGATGATGCTTCAATACCTTGCATTAATATCATTGACGATTCACCTCGATCTCCGAAACGCCAGAAGAAAGTAGTGGAGTTGGATTCGAGTGATGACGATGATATGGACTGCAATGTTTCTATGGATTGTAGAAGTGGCATCACACAAGGCTCAGCTTCATCAACTTCCAAAAAATTACCCCCCTCCTCAACATCAAAGGATAAAAGTGGCACTCTCACTTACGACGAATTGCAAGCTCTAGATGATATTGAATTGGCAAATGTTGTTATATTTGGTAATAGGACATTACGACCATTGCAGCATGAAGCATGTAAAGTAGCTTTGGCCAAGAAAGATTCTTTTATTCTTATGCCTACTGGGGGTGGCAAATCACTTTGCTACCAGCTTCCAGCAACTCTTCAACCAGGTGTTACAGTAGTTGTATCTCCCTTACTTTCACTCATTCAGGACCAGATAATCACACTAAACCTCAAATTTGGAATACCTGCTACTTTTTTAAATTCTCAACAAACATCTTCCCAAGCTGCAGCTGTCCTTCAAGAGCTAAGAAAAGACAAACCCTCATGCAAGCTCTTGTATGTGACACCTGAGAGAATTGCTGGCAACCAATCATTTCTTGAGATTCTAAAATGTATGCATCGGAAGGGACAGCTAGCAAGTTTCATTGTTGATGAGGCACACTGTGTTAGCCAATGGGGACATGATTTCCGGCCCGACTACCGGGAATTAGGATCTCTTAAGCGAATATTCCCAGACGTACCTGTCATGGCATTGACTGCTACTGCAACCCACTCAGTTCGTGAGGACATCTTAAATGCTTTAAGAATCCCACGTGCACTTGTCCTTGAGAGAAGCTTTGACAGGCCAAATTTGAAGTATGAAGTGATTGTGAAGACAAAGGAGGCACTGAAGCAGCTGGGACAGCTACTAATGGCTCGTTTCAGGAATGAGTGTGGAATTGTATACTGCCTTTCAAAAAGTGAATGTGTTGAGGTCTCAAAATTTTTGAATGAGAAATGTAAGATTAAGACTGTGTACTACCATGCTGGGTTGGCTGCCCGCCAGAGAGTTGCTGTTCAAAAGAAATGGCACGAAGGAGAGGTCCATATTGTATGTGCAACTATTGCATTTGGAATGGGGATAGACAAACCTGATGTTCGCTTTGTAATCCACAATACAATGTCAAAATCAATCGAAAGCTATTATCAAGAATCAGGAAGGGCTGGAAGAGATAACCTTCCTGCAGTCTGCATTGCACTCTACCAGAAGAAGGATTTCAGTAGAGTTGTGTGCATGATAAGAAATGGCCAAGGATATAAAAAGGAAAGGTTTAAGAGAGCAATGGATCAAGCCAAAAAGATGCAACAGTATTGTGAACTAAAGGTTGAATGCCGGAGACAAACTTTACTCCAACATTTTGGAGAATCTTTTGACAGAAAAGCCTGCAAGTATGGATCTAACCCCTGTGATAATTGTCTCAAGATTGCATTGTGA 1848 0.4183 MGSTSRNRNRNKKEQDENMELEKARLLSLAIDFGFDHNSAVKCLDRLIDLYGDDGRDFITVEHCGDDFLTALAESMEAMEEWDDVEEMESQACGTLTDILDHSSVAKCGDDGQDNHDADDASIPCINIIDDSPRSPKRQKKVVELDSSDDDDMDCNVSMDCRSGITQGSASSTSKKLPPSSTSKDKSGTLTYDELQALDDIELANVVIFGNRTLRPLQHEACKVALAKKDSFILMPTGGGKSLCYQLPATLQPGVTVVVSPLLSLIQDQIITLNLKFGIPATFLNSQQTSSQAAAVLQELRKDKPSCKLLYVTPERIAGNQSFLEILKCMHRKGQLASFIVDEAHCVSQWGHDFRPDYRELGSLKRIFPDVPVMALTATATHSVREDILNALRIPRALVLERSFDRPNLKYEVIVKTKEALKQLGQLLMARFRNECGIVYCLSKSECVEVSKFLNEKCKIKTVYYHAGLAARQRVAVQKKWHEGEVHIVCATIAFGMGIDKPDVRFVIHNTMSKSIESYYQESGRAGRDNLPAVCIALYQKKDFSRVVCMIRNGQGYKKERFKRAMDQAKKMQQYCELKVECRRQTLLQHFGESFDRKACKYGSNPCDNCLKIAL* 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1305 615 MobiDBLite consensus disorder prediction 163 188 - -
Lan4g1305 615 Pfam RecQ zinc-binding 542 611 IPR032284 -
Lan4g1305 615 CDD DEXHc_RecQ 208 405 - -
Lan4g1305 615 PANTHER DNA HELICASE RECQ FAMILY MEMBER 39 612 - -
Lan4g1305 615 PANTHER BLOOM SYNDROME PROTEIN 39 612 - -
Lan4g1305 615 CDD SF2_C_RecQ 406 539 - -
Lan4g1305 615 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 423 573 IPR001650 -
Lan4g1305 615 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 222 398 IPR014001 -
Lan4g1305 615 Gene3D - 173 405 IPR027417 -
Lan4g1305 615 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 337 346 IPR002464 -
Lan4g1305 615 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 208 612 IPR004589 GO:0004386|GO:0006310
Lan4g1305 615 Gene3D - 406 613 IPR027417 -
Lan4g1305 615 Pfam DEAD/DEAH box helicase 216 384 IPR011545 GO:0003676|GO:0005524
Lan4g1305 615 Pfam Helicase conserved C-terminal domain 421 529 IPR001650 -
Lan4g1305 615 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 253 551 IPR027417 -
Lan4g1305 615 SMART helicmild6 448 530 IPR001650 -
Lan4g1305 615 SMART ultradead3 210 414 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1305 Lan-Chr4 21861068 21872682 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1305 237 563 Eukaryotic Initiation Factors Gene Family AT5G11170 26.163 1.64e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1305 K10899 - gmx:100806070 964.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g1305 4 21861068 21872682 Lan4g1305 4 21861068 21872682 ECH