Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1304 ATGTCGTATCGTCCAACCGGGAACGCGAGGACGGATATCCGTCGCAACCGTTACAAGGTGGCGGTGGACGCCGAAGAAGGTCGTAGAAGGCGTGAGGACACGATGGTGGAGATCCGTAAGAACCGTAGAGAAGAGAGCTTGCAGAAGAAGAGACGTGAGGGCCTTCCACCTCAGCAAATTCCTTCTGTTAACTCTACTGTTGTGGATAAGAAGTTGGAACACCTACCTACCATGGTTGCAGGTGTTTGGGCTGAAGACAATAACCTGCAGCTTGAGTCAACTACTCAGTTTCGGAAGTTGCTTTCAATTGAACGTAGTCCACCAATCGAGGAAGTTATACAAACTGGTGTAGTTTCTCGGTTTGTTGAATTTCTGATGAGAGAAGACTTTCCACAGCTGCAGTTTGAGGCAGCATGGGCTTTGACAAATATAGCCTCTGGGACATCTGAAAACACCCAGGTGGTAATTGAACATGGGTCTGTCCCAATTTTTGTGAAGCTCCTTGCTTCTCCTAGTGATGATGTCCGAGAACAGGCTGTGTGGGCATTAGGAAATGTTGCTGGGGATTCTCCAAGATGCCGTGATCTTGTTCTTGGTCATGGGGCTTTGCTTCCTCTATTAGCACAATTGAATGAACATGCAAAGCTCTCCATGCTTAGAAATGCTACCTGGACACTTTCAAACTTCTGCAGGGGCAAGCCACAGCCTTCTTTTGACCAGGTTAAACCTGCCCTTCCTGCACTTGCTCGTCTTATTCATTCAAATGATGAAGAGGTCTTGACTGATGCCTGTTGGGCACTTTCATATCTTTCTGATGGTACAAACGACAAAATTCAAGCTGTAATTGAATCTGGTGTTTGTCCCCGGCTTGTTGAGCTTCTGCTGCACCCATCCCCCTCGGTGCTAATTCCTGCTCTTCGTACAGTTGGAAATATTGTCACCGGAGATGATATTCAAACTCAGGTTATCATCAACCATCAAGCTCTCCCTTGTCTTCTGAATCTGTTGACCAATAATTATAAGAAAAGCATAAAAAAGGAAGCTTGTTGGACCATATCAAACATCACAGCTGGGAATAATCAGCAAATTCAGGCTGTAGTTGAGGCTAATATATTTGGTCCTTTGGTTAACCTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAGGCTGCTTGGGCTATCTCAAATGCTACGTCTGGTGGATCTCATGATCAAATCAAGTACCTGGTAAGTCAAGGGTGTATCAAGCCCTTGTGTGATCTCCTCATCTGTCCTGATCCTAGGATTGTGACAGTTTGCCTGGAAGGCCTTGAGAACATCCTGAAGGTAGGGGAAGCTGATAAAAATACGGGCACTACTGGTGACGTTAACCTGTATGCCCAAATGATTGATGATGCCGAGGGATTGGAGAAAATTGAGAACCTCCAGAGTCATGACAACACAGAGATCTATGAAAAGTCAGTGAAGATTCTTGAGACATACTGGTTGGAGGAAGAAGACGAGACTATGCCTCCTGGGGATGCTGCTCAATCAGGGTTCAACTTTGGTAGCACTGGTGCTCCTTCTGTGCCTTCTGGTGGATTCAACTTTAATTAG 1596 0.4561 MSYRPTGNARTDIRRNRYKVAVDAEEGRRRREDTMVEIRKNRREESLQKKRREGLPPQQIPSVNSTVVDKKLEHLPTMVAGVWAEDNNLQLESTTQFRKLLSIERSPPIEEVIQTGVVSRFVEFLMREDFPQLQFEAAWALTNIASGTSENTQVVIEHGSVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLGHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPSFDQVKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIESGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDIQTQVIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAGNNQQIQAVVEANIFGPLVNLLQNAEFDIKKEAAWAISNATSGGSHDQIKYLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKNTGTTGDVNLYAQMIDDAEGLEKIENLQSHDNTEIYEKSVKILETYWLEEEDETMPPGDAAQSGFNFGSTGAPSVPSGGFNFN* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1304 531 ProSiteProfiles IBB domain profile. 1 60 IPR002652 GO:0006606|GO:0061608
Lan4g1304 531 MobiDBLite consensus disorder prediction 39 62 - -
Lan4g1304 531 PANTHER IMPORTIN ALPHA 4 521 - -
Lan4g1304 531 PIRSF Importin_alpha 6 530 IPR024931 GO:0005737|GO:0006606|GO:0061608
Lan4g1304 531 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 243 285 IPR000225 GO:0005515
Lan4g1304 531 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 116 159 IPR000225 GO:0005515
Lan4g1304 531 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 159 201 IPR000225 GO:0005515
Lan4g1304 531 SMART arm_5 402 442 IPR000225 GO:0005515
Lan4g1304 531 SMART arm_5 148 188 IPR000225 GO:0005515
Lan4g1304 531 SMART arm_5 233 272 IPR000225 GO:0005515
Lan4g1304 531 SMART arm_5 274 314 IPR000225 GO:0005515
Lan4g1304 531 SMART arm_5 316 357 IPR000225 GO:0005515
Lan4g1304 531 SMART arm_5 189 231 IPR000225 GO:0005515
Lan4g1304 531 SMART arm_5 359 399 IPR000225 GO:0005515
Lan4g1304 531 SMART arm_5 105 146 IPR000225 GO:0005515
Lan4g1304 531 PANTHER IMPORTIN SUBUNIT ALPHA 4 521 - -
Lan4g1304 531 Pfam Atypical Arm repeat 457 503 IPR032413 -
Lan4g1304 531 Gene3D - 73 496 IPR011989 -
Lan4g1304 531 SUPERFAMILY ARM repeat 14 500 IPR016024 -
Lan4g1304 531 Pfam Armadillo/beta-catenin-like repeat 106 146 IPR000225 GO:0005515
Lan4g1304 531 Pfam Armadillo/beta-catenin-like repeat 403 440 IPR000225 GO:0005515
Lan4g1304 531 Pfam Armadillo/beta-catenin-like repeat 244 271 IPR000225 GO:0005515
Lan4g1304 531 Pfam Armadillo/beta-catenin-like repeat 148 187 IPR000225 GO:0005515
Lan4g1304 531 Pfam Armadillo/beta-catenin-like repeat 319 357 IPR000225 GO:0005515
Lan4g1304 531 Pfam Armadillo/beta-catenin-like repeat 359 398 IPR000225 GO:0005515
Lan4g1304 531 Pfam Armadillo/beta-catenin-like repeat 275 313 IPR000225 GO:0005515
Lan4g1304 531 Pfam Armadillo/beta-catenin-like repeat 190 231 IPR000225 GO:0005515
Lan4g1304 531 Gene3D - 13 52 IPR036975 GO:0006606
Lan4g1304 531 Pfam Importin beta binding domain 14 95 IPR002652 GO:0006606|GO:0061608
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1304 Lan-Chr4 21847451 21852525 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1304 K15042 - gmx:100789135 986.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g1304 4 21847451 21852525 Lan4g1304 4 21847451 21852525 ECH
Lan12g0883 12 15876981 15881492 Lan4g1304 4 21847451 21852525 ECH
Lan20g0629 20 4964784 4970395 Lan4g1304 4 21847451 21852525 LSH