Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1303 ATGGTAAGGGGCAGAAAGGTTAGTAGCAAACACAATTCTAGAAATGGGGCTCGGTCTAAGGAGGATGGGGTCTCTGATGATTCTGATGAGGACTATGTGGTTTCAGATGAAGGTAGAGATGCGTCTGATAATTCAGAGTATTATTGTTCCTCTTTAGATGGATGTGCATCGGAAGATAGTTTGGATAGTTTTATTGTGAAGGGGGAGGAGGATGAAGAAGAGGAATTTCATGGTGTGGGGAATTCAAATAGATCCAAGGCTAGAAACACAAGAAAAGTCTTAAGAAAGGGGAGGAGGATTACACGTGAAGAAGAAGAGGAGGAGGAGGAAATTCGATTCAATAGATCAAGGGCCGGAAATGGTGATTGTGGTCAGCAGAAAAATGGAAGTAAAGCATCACGAAAGAGAGGACGGATTGCATATGCAGAACAACTAGAGGACGAGGAGGAGAAGGTGGAGAGAGTTGGACATGAGGAAGATGAAGAGAAGGTGGAGACAGATGGAGAGAAGGACGGGGAAGGAAAACAACTGCAGGTGAAAGAGGAAGAAGATGATGAATATAAGGTGGAAGATGATGTAGATGAAGATGAATATAAGGTGGAGGAGGAAGAGGAGGATGGAGATGAGGACGATGAGGAGGACTTTGATTGTGAATATGATGATGAAATAACGCCCGAGGAAGAAGATTATTCAGATGAGGAAGAAGAAATAAGGGTGCGAAAGAAGAAAAATAATGGCATGAAAATGGGCAAGAAGGTTTCGCTGAAAAGGGCACCTGTAGTTTGTGCCAGAGGTCGAAAAAGGCAGAGTACACGAGCATCAAAGAAGCCCTTGAGAAAACAAAGAAGAAAGAATGGGGGGTTTAGGAAGAGAGCAAGATATGACAGTGAAGATGATTTTATAAATAATGGCTCACCCATCAGGACAACAAGTAGGAAAAAAAGGGTCCGAAAGAGGAGAAAGCTTGTTCTTGCTGATTCAGGTTCAGATCATGTGTCTTCTGGATCATCTGATGTCGAGTATACCATATCTGAAGAAGAGAGAGAACAGTTGAGAGAAGCCAATGAATTGTGTGGAAGATCTAGAAATAACTTGAGGAGTTCATCCCTTCTAACAAAAAGTGAAGAGGTTGGAGTCCATGATGATTTACATCAGCAACACAAGCCTCCAGGTCGTAAGGGTAAGGAAAAGATAGAAGAACCTCAAGGAAGAAAGGGTAAGGAAAAGGTGGTAGGATCAAAAAGTGAGGTGGTGAAGCAGGTGTGCGGGATTTGTCTGTCCGAGGAAGATAAAAGAAGAACAAGGGGAGTATTAGATTGTTGCACTCATTATTTTTGTTTTGCTTGCATTAATGAATGGGCAAAGGTGGAATCTCGATGCCCTTTGTGTAAACAGAGGTTCAAAACAATCAGTAAGCCTGCAAGATCAACTGCAGGGATTGATTTAAGAGAAGTGGTTATACAAATCCCTGAACGAGACCAGGTTTATCAGCCCTCTGAAGAAGAACTCAGGAGCTATATTGATCCATACGAGTCTGTTATTTGTTCAGAGTGCCATCAAGGTGGAGATGATGGCCTAATGTTATTATGTGATATTTGTGACTCTCCTTCACATACATATTGTGTGGGTTTGGGGCGTGAAGTTCCCGAAGGTAATTGGTATTGTGATGGTTGTAGGCCAGTTGCCTTGGGATCTTCAACCTACCAAGTACAAGAATGTGTGGCTGATCCAAGGGAGACAGTACAACCTATTAGACAGCTGCCCCCTGTTCTAAATGTATCCGAGAGTATAGACCTCAACTTGGAATCTTCACCACAGGCAGCTTTTAATCTAGGATTTGGGCAGTTTTCATCTTCTAGGTTTAATGGCAGAAGTGTCCAAGGAGTTTCTCCAGTATCTGGGGGAGGGGCACCAACTTTATCAGGTAGGCGCTGGATCCACCGTCATATTCACCAGATTCTTTCTATGGATAGAATGACTTCTACAACTGGCAGGACTGGTGTTATTCCAGCTACCAGTTCAACTAGTAACATATATAGCTCTCAAATTGTTCAAGGTAGGGAAACAACCACTCAACATATAAGGACACAGGATGTCGGAACATCACATGACACATTTTTTGATGAGACATTATGCAACAATAATGCCTCTCAGTTAATGCAGAACGGGGCATTATGGCCTGGACTCTTGGGGACACCCCCGATTCCAGATTGTGAACAAGTTCATCAGTTTAGCACAATAAACACTATCCCAGATGGTAACTTGTCACCTTTTGTCAGAGAAGGAAACTCTAACATTGCAATGGAGCAGTTGCAGTCAATGGTTAAAAGGCACCTGACGAGCTTGTGTCAAAATATTGATTTAGGTCATGATACTTTGAATGACATTGGAAAGAGTTCTATGCATACCATACTAGCAGCTTGTGGGCTTGAGCACAATCAGAGCGAGGTTTTCAATGTGCCCCCACCGCCCGTATGTCAGCATATTGAACGAATGGCTTGTCCGCAAACGAGTCTGATTAAAGGTTGCTGCTCATCTTGCTTTGATTCTTTTATAGGAGATGTGGTGAAGAGGATTTTGGACACAAGAATTTCGTCACAGACACAGTGGTTAAAATTAGCTCTTTAG 2628 0.4273 MVRGRKVSSKHNSRNGARSKEDGVSDDSDEDYVVSDEGRDASDNSEYYCSSLDGCASEDSLDSFIVKGEEDEEEEFHGVGNSNRSKARNTRKVLRKGRRITREEEEEEEEIRFNRSRAGNGDCGQQKNGSKASRKRGRIAYAEQLEDEEEKVERVGHEEDEEKVETDGEKDGEGKQLQVKEEEDDEYKVEDDVDEDEYKVEEEEEDGDEDDEEDFDCEYDDEITPEEEDYSDEEEEIRVRKKKNNGMKMGKKVSLKRAPVVCARGRKRQSTRASKKPLRKQRRKNGGFRKRARYDSEDDFINNGSPIRTTSRKKRVRKRRKLVLADSGSDHVSSGSSDVEYTISEEEREQLREANELCGRSRNNLRSSSLLTKSEEVGVHDDLHQQHKPPGRKGKEKIEEPQGRKGKEKVVGSKSEVVKQVCGICLSEEDKRRTRGVLDCCTHYFCFACINEWAKVESRCPLCKQRFKTISKPARSTAGIDLREVVIQIPERDQVYQPSEEELRSYIDPYESVICSECHQGGDDGLMLLCDICDSPSHTYCVGLGREVPEGNWYCDGCRPVALGSSTYQVQECVADPRETVQPIRQLPPVLNVSESIDLNLESSPQAAFNLGFGQFSSSRFNGRSVQGVSPVSGGGAPTLSGRRWIHRHIHQILSMDRMTSTTGRTGVIPATSSTSNIYSSQIVQGRETTTQHIRTQDVGTSHDTFFDETLCNNNASQLMQNGALWPGLLGTPPIPDCEQVHQFSTINTIPDGNLSPFVREGNSNIAMEQLQSMVKRHLTSLCQNIDLGHDTLNDIGKSSMHTILAACGLEHNQSEVFNVPPPPVCQHIERMACPQTSLIKGCCSSCFDSFIGDVVKRILDTRISSQTQWLKLAL* 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1303 875 MobiDBLite consensus disorder prediction 97 116 - -
Lan4g1303 875 SUPERFAMILY FYVE/PHD zinc finger 486 560 IPR011011 -
Lan4g1303 875 SMART PHD_3 514 559 IPR001965 -
Lan4g1303 875 Pfam PHD-finger 514 560 IPR019787 -
Lan4g1303 875 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 410 479 IPR013083 -
Lan4g1303 875 CDD RING-HC_Topors 422 464 - -
Lan4g1303 875 Pfam Ring finger domain 421 464 IPR001841 -
Lan4g1303 875 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 488 562 IPR013083 -
Lan4g1303 875 ProSitePatterns Zinc finger RING-type signature. 441 450 IPR017907 -
Lan4g1303 875 PANTHER F18C1.6 PROTEIN 1 862 - -
Lan4g1303 875 SUPERFAMILY RING/U-box 421 470 - -
Lan4g1303 875 MobiDBLite consensus disorder prediction 184 233 - -
Lan4g1303 875 MobiDBLite consensus disorder prediction 374 410 - -
Lan4g1303 875 MobiDBLite consensus disorder prediction 1 46 - -
Lan4g1303 875 MobiDBLite consensus disorder prediction 375 410 - -
Lan4g1303 875 MobiDBLite consensus disorder prediction 136 183 - -
Lan4g1303 875 SMART ring_2 422 463 IPR001841 -
Lan4g1303 875 MobiDBLite consensus disorder prediction 66 346 - -
Lan4g1303 875 MobiDBLite consensus disorder prediction 268 289 - -
Lan4g1303 875 ProSiteProfiles Zinc finger RING-type profile. 422 464 IPR001841 -
Lan4g1303 875 PANTHER F18C1.6 PROTEIN 1 862 - -
Lan4g1303 875 Coils Coil 344 364 - -
Lan4g1303 875 Coils Coil 142 165 - -
Lan4g1303 875 ProSiteProfiles Zinc finger PHD-type profile. 512 561 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1303 Lan-Chr4 21840929 21844709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1303 430 558 C2H2 Transcription Factor Family AT3G01460 27.586 8.76e-09 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lan4g1303 PHD 7.3e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1303 - - gmx:100797448 980.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g1303 4 21840929 21844709 Lan4g1303 4 21840929 21844709 ECH