Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1301 ATGAGTAACACTGAATTATCAAGGATGAAGCAACCACTTGTTCCTTTGGCAACTCTGATTGGCCGCGACCTACGGAACTTAAAAATCGAAAAGCCTATTGTGAAGTATGGGCAAGCTGGTTTGGCAAGGAAAGGAGAAGATTACTTTCTAATCAAGACAGATTGCCAGAGGATTCCTGGGGATTCATCAACATTGTTTTCTGTCTTTGCGATCCTTGATGGGCATAATGGTATGTCTGCTGCTGTTTTTGCGAAGGAGAACATACTCAGCAATGTGACGAGTGCAATACCACAGGATATCAGCAGGGATGAGTGGCTTCAAGCTCTGCCTCGGGCTCTAGTGGTGGGTTTTGTGAAAACAGACATAGAGTTTCAGAAAAAAGGGGAAACTTCTGGAACGACAGCTACATTTGTTATCATTGACGGATGGACTGTTACCGTTGCATCTGTTGGTGATTCTCGTTGCATATTAGATACCCAGGGAGGTGTTGTTTCTCTCTTGACGGTTGATCATAGGTTGGAAGAAAATGTAGAAGAGAGGGAGCGCGTTACTGCCAGTGGTGGCGAAGTAGGAAGACTCAATGTATATGGAGCCAATGAGGTAGGGCCTCTTCGCTGCTGGCCTGGTGGATTGTGCCTTTCTAGATCAATTGGTGACACAGATGTGGGAGAGTATATTGTGCCAATACCACACGTTAAGCAAGTGAAGCTTTCAAATGCTGGCGGAAGGCTTATAATAGCATCTGATGGTATTTGGGATGCTTTATCTTCTGATGTGGCTGCCAAGTCATGCCGGGGTCTACCTGCTGAGCTTGCTGCAAAGCTAGTGGTTAAGGAAGCTCTGAGGTCGAGAGGGCTGAAAGATGATACAACTTGCCTTGTTGTAGATATAATTCCTTCAGACTATCCCGTGTTACCAATAATTCCAAGAAAGAAGTATAATATGCTAATTTCTCTCTTCTTCAGAAAGAAATCTCAAAACTCTTCAAACAAGGCTTCTAATAAGCTTTCCGCAGTTGGTGCTGTGGAGGAGTTATTTGAAGAGGGTTCAGCAGTGCTTACGGAGAGGCTGGGTAAGGAATCTCCATTTAATATGAATTCTGGGATTTTCCGTTGTGCGGTTTGCCAAGTGGATCAACCTCCTGGTGATGGTTTAGCAGTGAACTCTGGACCTTATTTCCCTTCAGCATCTAAGTCATGGGAAGGTCCATTTCTCTGCACAAACTGTCGGAAGAAGAAAGACGCCATGGAAGGAAAAAGGCTTAGCATTCCCATTGTGGACAGCATAGTAATCTAG 1296 0.446 MSNTELSRMKQPLVPLATLIGRDLRNLKIEKPIVKYGQAGLARKGEDYFLIKTDCQRIPGDSSTLFSVFAILDGHNGMSAAVFAKENILSNVTSAIPQDISRDEWLQALPRALVVGFVKTDIEFQKKGETSGTTATFVIIDGWTVTVASVGDSRCILDTQGGVVSLLTVDHRLEENVEERERVTASGGEVGRLNVYGANEVGPLRCWPGGLCLSRSIGDTDVGEYIVPIPHVKQVKLSNAGGRLIIASDGIWDALSSDVAAKSCRGLPAELAAKLVVKEALRSRGLKDDTTCLVVDIIPSDYPVLPIIPRKKYNMLISLFFRKKSQNSSNKASNKLSAVGAVEELFEEGSAVLTERLGKESPFNMNSGIFRCAVCQVDQPPGDGLAVNSGPYFPSASKSWEGPFLCTNCRKKKDAMEGKRLSIPIVDSIVI* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1301 431 CDD PP2Cc 40 297 IPR001932 -
Lan4g1301 431 Gene3D - 35 301 IPR036457 -
Lan4g1301 431 SMART PP2C_4 23 295 IPR001932 -
Lan4g1301 431 ProSiteProfiles PPM-type phosphatase domain profile. 32 297 IPR001932 -
Lan4g1301 431 PANTHER ALPHABET, ISOFORM E-RELATED 2 425 - -
Lan4g1301 431 SUPERFAMILY PP2C-like 38 297 IPR036457 -
Lan4g1301 431 SMART PP2C_SIG_2 50 297 IPR001932 -
Lan4g1301 431 PANTHER PROTEIN PHOSPHATASE 2C 5-RELATED 2 425 - -
Lan4g1301 431 Pfam Protein phosphatase 2C 63 280 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1301 Lan-Chr4 21804085 21806824 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1301 1 422 PP2C-type Phosphatase Gene Family AT1G09160 75.592 0.0 652
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1301 - - gmx:100794630 714.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g1301 4 21804085 21806824 Lan4g1301 4 21804085 21806824 ECH
Lan20g0632 20 4987443 4990913 Lan4g1301 4 21804085 21806824 LSH
Lan14g0276 14 4011030 4015782 Lan4g1301 4 21804085 21806824 PCT
Lan2g0273 2 2311327 2314787 Lan4g1301 4 21804085 21806824 PCT
Lan4g1301 4 21804085 21806824 Lan14g0276 14 4011030 4015782 PCT
Lan4g1301 4 21804085 21806824 Lan2g0273 2 2311327 2314787 PCT