Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1298 ATGGGGCGTTTTTCGTCTATGTTCAATGGTTTAGCAAAGTCATTTTCAATGAAGAAAGCTAAGAGATCTGGTAGATGTAGTGGAAGAGAAGCTGCAGAAGCAATGGCAAAAGAAGCTAAAAAAACTGACTCTTTACTATGTAGCTCAGGCACTGTTCATGTTGATGGGTCAAACAACTTAGCCTCAGTTTTCTCCAAAAAAGGCCAGAAAGGAGTGAATCAAGATTGCTGCATAGTGTGGGAAGAATTTGGGTGCCAAGAGGACATGATATTCTGTGGGATATTTGATGGGCATGGATCATGGGGTCACTATGTGGCTAAAAGAGTAAGAGAGTCAATGCCACCATCTTTGTTATGTAACTGGCAAGAAACACTTTCTCAAGATATTGATGTAGAGACAGAGAAAAAACAACACAGGTTTAATATATGGAAGCACTCTTTCTTGAAGACATGTGCTGCCATTGATCAAGAACTAAAGGAGAATCGAAAGATTGATTCATTTTCCAGTGGAACAACTGCACTCTCAATTGTTAGACAGGGTGAACTCATTGTGATTGCAAATGTTGGTGACTCACGTGCTGTATTAGCTACAACATCAAATGAAGGAACTTTGATACCAGTTCAACTAACACTAGATTTCAAGCCCAATTTGCCTCAGGAAGCAGAGAGAATTATGGAGTGCCAAGGGAGAGTGTTCTGCTTAGAAGATGAGCCAGGTGTGCATAGAGTTTGGATGCCTGATGAAGAGTCTCCTGGACTAGCCATGTCTAGAGCTTTTGGTGACTATTGCATCAAAGAGTATGGTCTTATTTCAGTGCCTGAGGTAACACACAGGAATTTAACCAGCAATGACCAGTTTGTTGTGCTAGCCACTGATGGGGTGTGGGATGTGATCTCAAATCAAGAAGCAGTGGATATTGTGTCTTCAACACCAGACAGAACAAAATCAGCAAAACGTTTGGTGGAGTGTGCAATGCATGCATGGAAACGAAAGAGAAGGGGTATTGCCATGGATGACATTTCAGCTATTTGTCTCTTTTTTCACTCTTCACTTTCACTCTAA 1062 0.4124 MGRFSSMFNGLAKSFSMKKAKRSGRCSGREAAEAMAKEAKKTDSLLCSSGTVHVDGSNNLASVFSKKGQKGVNQDCCIVWEEFGCQEDMIFCGIFDGHGSWGHYVAKRVRESMPPSLLCNWQETLSQDIDVETEKKQHRFNIWKHSFLKTCAAIDQELKENRKIDSFSSGTTALSIVRQGELIVIANVGDSRAVLATTSNEGTLIPVQLTLDFKPNLPQEAERIMECQGRVFCLEDEPGVHRVWMPDEESPGLAMSRAFGDYCIKEYGLISVPEVTHRNLTSNDQFVVLATDGVWDVISNQEAVDIVSSTPDRTKSAKRLVECAMHAWKRKRRGIAMDDISAICLFFHSSLSL* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1298 353 Gene3D - 50 349 IPR036457 -
Lan4g1298 353 SMART PP2C_4 51 345 IPR001932 -
Lan4g1298 353 ProSiteProfiles PPM-type phosphatase domain profile. 60 347 IPR001932 -
Lan4g1298 353 PANTHER CATALYTIC/PROTEIN PHOSPHATASE TYPE 2C 1 350 - -
Lan4g1298 353 SUPERFAMILY PP2C-like 52 348 IPR036457 -
Lan4g1298 353 Pfam Protein phosphatase 2C 76 322 IPR001932 -
Lan4g1298 353 PANTHER ALPHABET, ISOFORM E-RELATED 1 350 - -
Lan4g1298 353 CDD PP2Cc 61 347 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1298 Lan-Chr4 21775657 21779352 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1298 1 348 PP2C-type Phosphatase Gene Family AT3G05640 72.571 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1298 - - gmx:100808955 627.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g1298 4 21775657 21779352 Lan4g1298 4 21775657 21779352 ECH
Lan4g0898 4 10915252 10919816 Lan4g1298 4 21775657 21779352 PCT
Lan2g0275 2 2347680 2351172 Lan4g1298 4 21775657 21779352 PCT
Lan4g0250 4 4093088 4095479 Lan4g1298 4 21775657 21779352 PCT
Lan4g1298 4 21775657 21779352 Lan4g0898 4 10915252 10919816 PCT
Lan4g1298 4 21775657 21779352 Lan2g0275 2 2347680 2351172 PCT