Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1297 ATGTTTCGTTACATCTATAACGTTGTGACCAGAAACAACAACAATAAAATCAACAACAATAATGTTAAGGGCACAATGGTGTTAATGAAGAAGAATGTGCTGGAATTCAATGATTTCGGTGCAACCATTCTTGATGATTTTAATGAGTTTGTGGGCAATCGAATTTCTCTTCAGTTGATAAGTGCCGTCAAGGTCGACCAAGGGAATGGAATGAGGGGGGAACTTGGAAAGCCTGCATATGTAGAAGACTGGATCACCACAATGACACCATTGAAAGCAGGAGAAACAGCATTCAAGATTACATTTGAGTGGGATGAAGAAATAGGAATACCAGGAGCATTTTTAATAAGGAATAATCATCACAGTGAGTTCTTCCTCAAAAGTCTCACTCTGGAAAATGTTCCAGGCCATGGTGTCATTCACTTTATCTGCAACTCTTGGGTATACCCTGCAGATAAATATGAAAAAGATCGCATTTTCTTCAGCAACAAGACATACCTTCCTAGTGAAACACCAGTGCCACTGATTAAGTACAGAAAAGAAGAATTGGAGAATTTAAGAGGAGATGGAAAAAAAATGCTCCAAGAGTGGGACAGGGTCTATGATTATGCATACTACAATGATCTGGGAAGTCCAGATAGCGGACCACAATATGTTCGTCCAATCCTCGGAGGGTCTAGTGAATATCCTTACCCTCGCAGGGGAAGAACCGGTCGAAAACCCACAAAATCAGATCCTAATTGTGAGACTAGACTGAACCTTGCCTTGAGCATAGACATATATGTTCCAAGGGATGAAAGATTTGGTCATTTGAAAATGGAAGATTTTCTTGCCTATGCACTGAAATCCGTAGTTCAAGTTCTCAAACCTGAACTAGGAGCTCTATTTGATAACACCCCCAATGAGTTTGACAACTTTGAAGATGTGCTTAAACTCTATGGAGGTGGGGTTAAGTTACCTGAGGGTATACTTACCGATGTTAAGGATAATGTTCATGAAGAGGTGATGAAGAAAATTGTAAAAACTGATGGCAAAAGTCTCCTTAAATTCCCCCTACCTCATGTTATTGCAGAGGATAAGTCTGCATGGAGAGCGGATGAAGAGTTTGGAAGAGAGATGCTGGCTGGTATAAACCCGATCATGATTTGTCGACTCGAAGAATTTCCACCAACAAGCAAGCTAGATCGTAAAATCTATGGTGATCATACCAGCATAATAGCCAAAGAACACATCGAACGTAATCTGGACGGGCTCAGAGTAGAAGAGGCAATTAGACAAAGGAAGTTGTTCATATTAGATCACCATGATGATTTAATGCCATTCTTGAGGAGGATAAACTCCACTTCTACAAAGCTATATGCTAGCAGGACAATTCTTTTCTTGAAAAATGATGGGACTTTAAAGCCTGTTGCTATTGAATTGAGTTTACCACACCCTGAGGGAGATCAATATGGTGCTTCAAGTGAAGTTTACATGCCTGCAGAACAAGGTGTTGGAAATTCCCTCTGGCAACTAGCTAAAGCTTATGTAGGAGTAGCCGACTCGGGCTATCATCAACTTATCAGCCACTGGTTGCATACTCATGCAACTATGGAACCTCTCATTATAGCTTCAAATAGGCAGCTGAGTGTGTGTCACCCGATTCATAAGCTATTGCATCCTCACTTTCGCGACACGATGAATATAAACGCACTTGCGAGGCAGATTCTCATCAATGCAGGCGGTGCTCTAGAGTACACAGTTTTCCCATCCCGGTATTCTATGGAGCTTTCATCCGCGCTTTATAAGGAATGGAATTTCACTGAGCAAGGATTGCCTGCAGATCTTCTCAAGAGAGGAGTGGCTGTTAAGGATCCAAGTTCTCCACATGGCCTTAGACTATTGATTGAGGATTACCCATTTGCAGTTGATGGACTAGAGATTTGGTCTGCCATCAAGACATGGGTTCAGGACTATTGCTCCTATTACTACAAGTATGATCAAACAGTTAAGGAAGATGAAGAACTCCAATCTTGGTGGAAGGAAATAAGAGAGGTGGGTCATGGTGACAAGAAAAATGAGCCTTGGTGGCCAAAGATGGAGACAATTGAAGAGCTCATTGAAACTTGCACTACCATTATATGGATTGCTTCAGCTCTACATGCTGCAATCAACTTTGGACAGTATCCATATGGAGGCTACCCTCCGAACCGTCCTTCGATGAGCCGAAGATTCATACCAGAACAAGGAACACCAGAATATGATGAACTTGTGGCAAATCCTGAGAAGGCTTATCTGAAAACAATAACTGCACAGTTTCAAGCTGTTCTTGGCATTTCACTTATTGAAATATTGTCTCAGCATTCTACTGATGAGGTATATCTTGGACAAAGGGATAGTCCTTATTGGACAAGTGATAAAGAACCACTTGAAGCCTTTGAGAAGTTTGGAAAGAAACTTGTGGAAATTGAAGAAAAGATATTGAGAATGAACAATGATGTGACACTGAAGAACAGGGTTGGACCAGTTAAGATGCCATACACATTGCTTTGTCCTTCAAGTGAAACTGGAATAACTAACATGGGTATTCCTAATAGTGTCTCTATTTAA 2589 0.4102 MFRYIYNVVTRNNNNKINNNNVKGTMVLMKKNVLEFNDFGATILDDFNEFVGNRISLQLISAVKVDQGNGMRGELGKPAYVEDWITTMTPLKAGETAFKITFEWDEEIGIPGAFLIRNNHHSEFFLKSLTLENVPGHGVIHFICNSWVYPADKYEKDRIFFSNKTYLPSETPVPLIKYRKEELENLRGDGKKMLQEWDRVYDYAYYNDLGSPDSGPQYVRPILGGSSEYPYPRRGRTGRKPTKSDPNCETRLNLALSIDIYVPRDERFGHLKMEDFLAYALKSVVQVLKPELGALFDNTPNEFDNFEDVLKLYGGGVKLPEGILTDVKDNVHEEVMKKIVKTDGKSLLKFPLPHVIAEDKSAWRADEEFGREMLAGINPIMICRLEEFPPTSKLDRKIYGDHTSIIAKEHIERNLDGLRVEEAIRQRKLFILDHHDDLMPFLRRINSTSTKLYASRTILFLKNDGTLKPVAIELSLPHPEGDQYGASSEVYMPAEQGVGNSLWQLAKAYVGVADSGYHQLISHWLHTHATMEPLIIASNRQLSVCHPIHKLLHPHFRDTMNINALARQILINAGGALEYTVFPSRYSMELSSALYKEWNFTEQGLPADLLKRGVAVKDPSSPHGLRLLIEDYPFAVDGLEIWSAIKTWVQDYCSYYYKYDQTVKEDEELQSWWKEIREVGHGDKKNEPWWPKMETIEELIETCTTIIWIASALHAAINFGQYPYGGYPPNRPSMSRRFIPEQGTPEYDELVANPEKAYLKTITAQFQAVLGISLIEILSQHSTDEVYLGQRDSPYWTSDKEPLEAFEKFGKKLVEIEEKILRMNNDVTLKNRVGPVKMPYTLLCPSSETGITNMGIPNSVSI* 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1297 862 Gene3D - 167 271 - -
Lan4g1297 862 Pfam PLAT/LH2 domain 65 161 IPR001024 GO:0005515
Lan4g1297 862 Gene3D - 496 861 - -
Lan4g1297 862 PRINTS Lipoxygenase signature 500 517 IPR013819 GO:0016702|GO:0046872
Lan4g1297 862 PRINTS Lipoxygenase signature 518 535 IPR013819 GO:0016702|GO:0046872
Lan4g1297 862 PRINTS Lipoxygenase signature 538 558 IPR013819 GO:0016702|GO:0046872
Lan4g1297 862 CDD PLAT_LH2 22 163 IPR042057 -
Lan4g1297 862 Gene3D - 362 495 - -
Lan4g1297 862 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 165 862 IPR013819 GO:0016702|GO:0046872
Lan4g1297 862 ProSiteProfiles PLAT domain profile. 37 162 IPR001024 GO:0005515
Lan4g1297 862 SUPERFAMILY Lipoxigenase 167 862 IPR036226 -
Lan4g1297 862 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 20 166 IPR036392 GO:0005515
Lan4g1297 862 SMART LH2_4 20 163 IPR001024 GO:0005515
Lan4g1297 862 Pfam Lipoxygenase 175 845 IPR013819 GO:0016702|GO:0046872
Lan4g1297 862 Gene3D PLAT/LH2 domain 14 166 - -
Lan4g1297 862 PANTHER LIPOXYGENASE 13 862 - -
Lan4g1297 862 ProSitePatterns Lipoxygenases iron-binding region signature 2. 545 555 IPR020834 GO:0016702|GO:0046872
Lan4g1297 862 MobiDBLite consensus disorder prediction 226 246 - -
Lan4g1297 862 ProSitePatterns Lipoxygenases iron-binding region signature 1. 518 532 IPR020833 GO:0016702|GO:0046872
Lan4g1297 862 Gene3D - 272 361 IPR027433 -
Lan4g1297 862 PRINTS Plant lipoxygenase signature 132 150 IPR001246 GO:0016491
Lan4g1297 862 PRINTS Plant lipoxygenase signature 158 179 IPR001246 GO:0016491
Lan4g1297 862 PRINTS Plant lipoxygenase signature 197 213 IPR001246 GO:0016491
Lan4g1297 862 PRINTS Plant lipoxygenase signature 230 249 IPR001246 GO:0016491
Lan4g1297 862 PRINTS Plant lipoxygenase signature 300 321 IPR001246 GO:0016491
Lan4g1297 862 PRINTS Plant lipoxygenase signature 348 364 IPR001246 GO:0016491
Lan4g1297 862 PRINTS Plant lipoxygenase signature 387 406 IPR001246 GO:0016491
Lan4g1297 862 PRINTS Plant lipoxygenase signature 453 477 IPR001246 GO:0016491
Lan4g1297 862 PRINTS Plant lipoxygenase signature 775 789 IPR001246 GO:0016491
Lan4g1297 862 PANTHER LIPOXYGENASE 13 862 IPR000907 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1297 Lan-Chr4 21718874 21724758 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1297 1 862 Acyl Lipid Metabolism Gene Families AT1G55020 65.741 0.0 1211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1297 K15718 - gmx:100802887 1385.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g1297 4 21718874 21724758 Lan4g1297 4 21718874 21724758 ECH
Lan8g0317 8 5262342 5266757 Lan4g1297 4 21718874 21724758 LSH