Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1279 ATGGCAATGGTTGAACCTCTTACTCTGAGGAATAAGCTCAAAGCTCTTTGCACTTATGGTGAGGATGGTTGGTCTTATGCCATTTTCTGGAGCTTTCATCCTAAGAACCCATTGTTGTTAACTGTAGAAGATGCATACTATGAAACACAATTGGGACAAGATATTGCCAACATGCTTCCCCAGGCTCACTTGTTTGGCAAAGGAATTGTTGGTATAGCTGCTTTTACTGGGAGGCACATATGGGTGCACTCAAATGGCCAAAACCATGATTGGAATTTGTCAGGGCATAACATTTATGAGGGGGATTTTGGATTGCATCAAGAATTCTCATCTGGGATAAAGACAATTGTGGCCATACCTGTCAAAGAATGCGGAGTGGTACAATTTGGGTCCAAAATGAAGATTTTGGAAAGAGTGGAATTTTTGGACCAAACACAAAGATTACTCATGGAGATAGATAATGTGGGTATGGTTAACATGTCAGGAAATGCAGTTTCACCACTGGATTGTGAAAAGTATGATTTAAATAGCTTCTTGGCTTCCTTTTCTTCTGAAAATTCATTCGACTCGAATCTTAAATATGCTCATGGTGAAAATTCTGAAGACCTAATGAGAAAGGTTTATTCTTATGAAAGTGTCAACAATCCTTTCCCTTCCCTATACAATATTTACCAAGAAGGAATGACTTTATTCAATGTTGATTCTTGTGTTGATGACCAATTGAATGCTACCAAAGAAGCTCAAGTTGCATTATCTGATAGGGATATTACTGATATGCTTTTGAGGCCTAACTCTTCTGTGAACAACATAATTTCCAACGGCGCTGATTTTGGTGAATGGAGTGATGAACATTCTTATTTTGATTCGTTCGGGCAACAATTGGTATCAGCAGATGAAAATGCGTTTTCTTGTAGTGAACTTGCTGTTCAAGATTCACCACTGTCTTCGATGTACAGTATGAACATAGGGGCATGCCCAGAAAATTTGCATAAGTCACTGGCTAATCAACAATCTTCCCAATCTGGTGTTTTGACACAAGTTGATTTCACATCAAGTTCAAACACACCATATGAAATCTCTATGAACATAGAGGCAGTTGATATGTCAGAAGAATTTTTAAACTTCAGCTCCATGGATGATCTTTGCCAGTGGTTTGCTCCTTCTCCGGATGATAATAACTTCAGAACAATTATTGCCGTGGATAACACCCATTCTGAATTAAATGAACATAATCCTATCTCATTGAGTACGCTTGGATGTGACATTCCAATGACATGCTTAGCTGGTGCTGAATCCATAGAAACATCTGCAGTTATGCATGGTCCTCAAAATAGTTTATTGGATTTCAACTGTGATCAAGCAAATGAATGGTGGGAGAATATGCCTACACCAGCACTGAGTCCTGCCAACTTTTCTGAATGCATATCAGAGTTAAACACTTGTACAGTGACTGGCACGCAGAACGGATTATTATTCTCAGAGTCTTTGAGTGGTGAAGCAAGTTACAATCCTTTGAGTAGTTCTAATTTTGAGCATGCATTTTCTCCCGATATAAGGCAACTGGTAGAATTCGCACCTGTGAATATAAATCCAATACAGCTTGGAAATCTTGCTAGGCCTGCTGAGGCTACATCAGACTCGACGGGCTCCATTTCTTACTTAGAGAAGACAAACAATCTTATAACGAAGAAAGATACATTCCAAAAATTGCAGGTACCTAGATGGATTGATGATGGCCATAGCACTAATATGGGAAAGTCAGTTTCTGCACATTATCAAACTCAAAAGCCAGAGGAGGGTACAACAAGGCGCTCCAAGAAAAGGGCTAGGCCAAAGGAGAGCACTCAGCCGCGACCGAAGGATCGCCAGCAGATCCAAGACTGCATTAAAGAGCTGAGAGGGATCATCCCCAATGGTGAAAAGTATAGCATTGATTCATTGTTGGAGCAAACGCACAAATACATGTATTACTTACAAAGTGTAACCAAGTATGCCGAGAAGCTACAAGAACCGATTGAGCTGAAGCTTATTGAGCAGGCAAATGAAGTGGTTCTAGAAGACAGTAATGTAGGAGATAACAAAAACCATGGTGTTACATGGACATTTGATTTGGCAAGTCCAACAATGGAATGTCCAATTAGAGTGGAGGATATGAACACACCTGGCCAAATGCTTATAGAGATGTTTTGTGAGCAAGGGGGTTTCTTCCTTGAGATAGCTGGCGAAATTCGGGATTTCGGGCTGAATATCTTGAAAGCAAAGATGACAGTTAGGAAGAACAAATTATGGGCACTTTTTATAGTTCAGGTTTACATTGTGCAACAGGCAAAGAGACATTTGACAAGGATAGATGTGTTTTACTTCCTTTTCAATCTTCTACACAGAACACAAAAATCCAGAATGGATTCAGCTAATAACATTGCAAAGGTTATTGATCCTACTTGA 2445 0.3967 MAMVEPLTLRNKLKALCTYGEDGWSYAIFWSFHPKNPLLLTVEDAYYETQLGQDIANMLPQAHLFGKGIVGIAAFTGRHIWVHSNGQNHDWNLSGHNIYEGDFGLHQEFSSGIKTIVAIPVKECGVVQFGSKMKILERVEFLDQTQRLLMEIDNVGMVNMSGNAVSPLDCEKYDLNSFLASFSSENSFDSNLKYAHGENSEDLMRKVYSYESVNNPFPSLYNIYQEGMTLFNVDSCVDDQLNATKEAQVALSDRDITDMLLRPNSSVNNIISNGADFGEWSDEHSYFDSFGQQLVSADENAFSCSELAVQDSPLSSMYSMNIGACPENLHKSLANQQSSQSGVLTQVDFTSSSNTPYEISMNIEAVDMSEEFLNFSSMDDLCQWFAPSPDDNNFRTIIAVDNTHSELNEHNPISLSTLGCDIPMTCLAGAESIETSAVMHGPQNSLLDFNCDQANEWWENMPTPALSPANFSECISELNTCTVTGTQNGLLFSESLSGEASYNPLSSSNFEHAFSPDIRQLVEFAPVNINPIQLGNLARPAEATSDSTGSISYLEKTNNLITKKDTFQKLQVPRWIDDGHSTNMGKSVSAHYQTQKPEEGTTRRSKKRARPKESTQPRPKDRQQIQDCIKELRGIIPNGEKYSIDSLLEQTHKYMYYLQSVTKYAEKLQEPIELKLIEQANEVVLEDSNVGDNKNHGVTWTFDLASPTMECPIRVEDMNTPGQMLIEMFCEQGGFFLEIAGEIRDFGLNILKAKMTVRKNKLWALFIVQVYIVQQAKRHLTRIDVFYFLFNLLHRTQKSRMDSANNIAKVIDPT* 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1279 814 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 622 666 IPR036638 GO:0046983
Lan4g1279 814 CDD ACT_UUR-ACR-like 725 769 - -
Lan4g1279 814 MobiDBLite consensus disorder prediction 582 596 - -
Lan4g1279 814 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 609 658 IPR011598 GO:0046983
Lan4g1279 814 MobiDBLite consensus disorder prediction 597 625 - -
Lan4g1279 814 MobiDBLite consensus disorder prediction 578 625 - -
Lan4g1279 814 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 7 812 IPR043561 GO:0003700|GO:0006355
Lan4g1279 814 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 58 147 IPR025610 -
Lan4g1279 814 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK (WITH NO LYSINE)-LIKE PROTEIN-RELATED 7 812 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1279 Lan-Chr4 21508663 21513601 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1279 571 798 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 43.421 3.40e-50 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1279 - - lang:109336274 1178.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g1333 11 20015292 20021537 Lan4g1279 4 21508663 21513601 LSH