Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1270 ATGGTCGTAAGCGGAGGGAAGACTCTGAAGCGAATGAAGAGGAGAATCACTGCTGATTTCTACGACTTTCTCTCGTTTCCTTCTCCTTCCATATCTTCGTCGGAGAAATTTTCCGGCGGACCGTTCAGGACTAACGTCCGCTCCTTCCTCACAAAGCACGCGCTTCTCCCGCCGCCGTCGGCGCTGTTTCCTCACTTGATGACGTGGCAGATCCTCTTCCGTGTCGGTGATCTCACTGACGGTGGTCCTGAGTCGGGTCCGGCGGTGGTGTGCCTCGACGTGGTGGAGGAGGACGTTGCTAGATCCAGATCCGTGTATTGCGATCAGTGCCGAGTTTTTGGTTGGAGTGGCCACCCAGTGTGCGGAAAACGTTACCATTTTATAATCAAAGCTGATGGGAGCTCCATTGGTGGGTACCACAAGCCGTGCATGTGCTGTGGAGATATCCTGCATTTGTCAGAATCCAGGTGCAAGTCATGCAACCATGTTACAACTACTGATGATGTTGAAGACTGGGTGTATCACCAGTTAGAGAACACGACTCATCTTTTACATGGTGTAGTCCATGCCAATGGTTATGGGCACCTTCTTCGGGTTAATGGCAGAGAAGGAGGCTCTAGATTCCTTTCTGGAAGCCATATTATGGATTTCTGGGATCGCCTCTGCAAGACACTTGGAGTTAGAAAAGTTAGCGTGATGGATGTTTCAAAGAAATATGGGCTAGAGTACCGCTTGCTCCATGCCATTATGAAAGGACATCCCTGGTATGGTGAATGGGGCTACGAATTTGTCTCTGGCAGCTATTGTCTAACACAGGAAGCATATAAATCTGCTGTTGAAAGCTTATCGAATCTACCCTTATCGATCTTCCTCTCCAAAGGACAGAATCCCCACTCTCGTGTGAAGGACATGATTTCTTATTACCACTCATTGTCAGAGCATAAGCTTGTAAATATGAGGGACCTCTTTTGTTTTTTGATGCATTTGATTAATGATGCTCGGAAGACTGTTCCTAAGGTGGATGACATAAACTGCAAGAAGCGTCGACTTAATACTTCTGGAATTTCTGGTTCATGGGAGAAGAACGACATTGAACGTGTGAAGGAAGCCATGCTCAGAGTGCTGCGAGCGGTGTCCGGGTCCAATTGGGTGAGCTGGCGTGCTGTCAGAGGTGCTGTCTGCAAGGTGGCCTCTCCAGAGCTTCTTGATTACTGCCTTGGGGAACTGGAAGGAAAAGTTGTCCATGGTGGGATGGTTGTTAATACCCGATGCAATCCCCAAACTGGAGCTTTAGAGTGCAGGCTTGAGGCTGCAAATGATTCTTTCTATGGAATAGTCGCAAACAACAATTCCTCAGGTCTTAAGTATCCATCTGAAGAGAATCTCCTACAATGCTTGAAATATTTATACGAGTCTTTGCTTCACCCTCAGGTGATGCTAAGTTATTTTGCCGAAGATACGAGGATTCTTGCATTGAGCTCTGTTCAGAAACTCCTTGACTGCAAGCAATTTGTCAAAGCTTATAGTCCTGAGATGTTACCAGTGTCAGATATTTATAAAATACGCATCTCATGCCAGGTTGAACTTGTTGAGGAATCAGAAGATCCTGCAGCTAAAACTCCACCAGAATTAGTTGTGCTGCCCATGAATGCCACAGTGCATGACCTCAAGATAGAAGCAGCAAATGCTTTTCAAGATGTATATCTTATGTTTAGAAGATTTCAAGTTGATGAGGTACTTGCCCTTCGCGGTGTAGATGATTCCACCCAGGTCAAGCTCTTGCTAGGATCAAAAGAAACAGTTTGTGTGCGAGGAAAATGCATGGGGAAGAATGGATTGAGCAAGTTCCGAATGGAACGAGGACTTGAGAGGTGGACAGTAGATTGCAGCTGTGGGGCTAAAGATGATGATGGGGAAAGAATGTTGGCTTGTGATATATGTGGTGTGTGGCGGCACACCAGGTGTTCTGACATTCGTGATACTCATCCTGTTCCGGCACGTTTTGTTTGCCCAAAATGTCTGAACTCTGACTCAAAAACTAAATCTAGTGGGCACTGCAAAGATGAGACTGTGACTAAGGTTAGCACTGCTACTAGTTGCTTTGGAAAGGGCTTGCCAGTGCCTCATGATGTTCGTTAA 2139 0.4647 MVVSGGKTLKRMKRRITADFYDFLSFPSPSISSSEKFSGGPFRTNVRSFLTKHALLPPPSALFPHLMTWQILFRVGDLTDGGPESGPAVVCLDVVEEDVARSRSVYCDQCRVFGWSGHPVCGKRYHFIIKADGSSIGGYHKPCMCCGDILHLSESRCKSCNHVTTTDDVEDWVYHQLENTTHLLHGVVHANGYGHLLRVNGREGGSRFLSGSHIMDFWDRLCKTLGVRKVSVMDVSKKYGLEYRLLHAIMKGHPWYGEWGYEFVSGSYCLTQEAYKSAVESLSNLPLSIFLSKGQNPHSRVKDMISYYHSLSEHKLVNMRDLFCFLMHLINDARKTVPKVDDINCKKRRLNTSGISGSWEKNDIERVKEAMLRVLRAVSGSNWVSWRAVRGAVCKVASPELLDYCLGELEGKVVHGGMVVNTRCNPQTGALECRLEAANDSFYGIVANNNSSGLKYPSEENLLQCLKYLYESLLHPQVMLSYFAEDTRILALSSVQKLLDCKQFVKAYSPEMLPVSDIYKIRISCQVELVEESEDPAAKTPPELVVLPMNATVHDLKIEAANAFQDVYLMFRRFQVDEVLALRGVDDSTQVKLLLGSKETVCVRGKCMGKNGLSKFRMERGLERWTVDCSCGAKDDDGERMLACDICGVWRHTRCSDIRDTHPVPARFVCPKCLNSDSKTKSSGHCKDETVTKVSTATSCFGKGLPVPHDVR* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1270 712 ProSitePatterns Uncharacterized protein family UPF0054 signature. 185 195 IPR020549 -
Lan4g1270 712 PANTHER OS01G0877500 PROTEIN 1 685 - -
Lan4g1270 712 Pfam PHD-finger 629 675 IPR019787 -
Lan4g1270 712 CDD PHD_MMD1_like 628 673 - -
Lan4g1270 712 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 685 - -
Lan4g1270 712 SMART PHD_3 628 674 IPR001965 -
Lan4g1270 712 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 614 681 IPR013083 -
Lan4g1270 712 SUPERFAMILY FYVE/PHD zinc finger 617 676 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1270 Lan-Chr4 21325712 21332184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1270 87 673 PHD Transcription Factor Family AT5G22260 30.207 1.19e-82 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lan4g1270 PHD 2.2e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1270 - - gmx:100818189 1165.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan20g0792 20 6850904 6856756 Lan4g1270 4 21325712 21332184 LSH