Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1265 TATGGGAATGTCCAACATTCTGTCTACACTCGCCAGTGCACAGAGCGAAGAATGAGAGGAAGACACGACCTTTCGATCCCAATTATCGGAAGTAACCACCGGCCACGTGGCCTAGACCGGGAGATAATTGAAACCTTCCCAACCTTCATATACTCCACCGTGAAGAGCCTCAAGATAGGAATGGCCACGCTAGAATGCGCCGTGTGCTTAAACGAGTTTCAAGACGATGAAAAACTGCGTTTGATCCCAGTTTGTAACCACGTGTTTCACGCTGAATGCATCGATGCTTGGTTAGTTAATCACTCCACATGCCCTGTTTGTCGCGCCAACCTTGTTTCCACACCAAGCGAAGTTGTTCCCTTTATGACGATTCAACTTCCGGATCAAACCGACCCGGAACCGGACCCGGTCCACGTTGATGAATTCAGTGGAAGACAAGGTACAGTGATGAAGGAGTCTCCGAAGTTGAGTAATAACAATTCGGTTAATCAGAACCGTCCACGTAGATCAAGGTCAACTGGGTTTAGATTCACGAATTTGCTTCCACGCTCTCACTCGCTGGTTCAACGCGGTGAGAATTTGGAGAGGTTCACGTTGAGGTTGCCGGAGGAGGTGAGGAATCAATTGGTGACGTCAACGCTTAGCCGCACGAAGAGTTTAGGCGTAGCTTTCACACCCGAGAGTAGTGAGAGGAGGGGTTATAGGACACGAAGTGTTGGCAGTGGCTGTGGGAGGAACAATCTCGAGCGGTTGGACCAGTCGGATCGGAGAATGTTTCGTTGGATGAGTAGAGCGGGTTCCAACATATCAAAGAAGGTTACTGAGTTTAATAAAGATGACGTGGGAGAACGATCATCGGACCGGCTATTTTCTGGAAAGGAAAATGATATGTGA 894 0.4866 YGNVQHSVYTRQCTERRMRGRHDLSIPIIGSNHRPRGLDREIIETFPTFIYSTVKSLKIGMATLECAVCLNEFQDDEKLRLIPVCNHVFHAECIDAWLVNHSTCPVCRANLVSTPSEVVPFMTIQLPDQTDPEPDPVHVDEFSGRQGTVMKESPKLSNNNSVNQNRPRRSRSTGFRFTNLLPRSHSLVQRGENLERFTLRLPEEVRNQLVTSTLSRTKSLGVAFTPESSERRGYRTRSVGSGCGRNNLERLDQSDRRMFRWMSRAGSNISKKVTEFNKDDVGERSSDRLFSGKENDM* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1265 297 CDD RING-H2_PA-TM-RING 65 108 - -
Lan4g1265 297 ProSiteProfiles Zinc finger RING-type profile. 66 108 IPR001841 -
Lan4g1265 297 SMART ring_2 66 107 IPR001841 -
Lan4g1265 297 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 113 IPR013083 -
Lan4g1265 297 MobiDBLite consensus disorder prediction 148 173 - -
Lan4g1265 297 Pfam Ring finger domain 65 108 IPR001841 -
Lan4g1265 297 PANTHER RING-H2 FINGER PROTEIN ATL11 7 229 - -
Lan4g1265 297 PANTHER RING FINGER DOMAIN-CONTAINING 7 229 - -
Lan4g1265 297 SUPERFAMILY RING/U-box 60 114 - -
Lan4g1265 297 MobiDBLite consensus disorder prediction 150 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1265 Lan-Chr4 21290942 21292008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1265 7 264 Rapid Response to Elicitors AT3G05200 39.855 1.01e-45 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1265 K10664 - lang:109340337 354.369
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0305 8 5140846 5141919 Lan4g1265 4 21290942 21292008 LSH
Lan20g0664 20 5251201 5252780 Lan4g1265 4 21290942 21292008 LSH
Lan4g0862 4 10515094 10516713 Lan4g1265 4 21290942 21292008 PCT
Lan4g1265 4 21290942 21292008 Lan4g0862 4 10515094 10516713 PCT