Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1264 ATGGACTTTGATCCAACCTTCTTATACCAATTTTCTGACCTTTCTAAGATTATCTCAGAACATAGTAGAAATTCAGAGATACCCATCATGGTTCCATTACAACAAACCTCTACTCTAGTTCCACCTCCACCAAAAAACATCTACTTTTATAGCCCAGACAATTTTCACCATTCTGAAATTAACCATCCCTTCAATGGGGTATACCATGATCCTTGTTTTCTGAAAAAGAGCCCTTCCTCCTCCACCAATCCTTTATCTATGGTCCAAACACTTTCTCTAGGTAATTCATACTCCAATTGGTCCAACAATAATTTTGTCAATTCAAACTACCCTATAGGTTTTGCACCAAATAATGACAAAATGGAAGCCTCAAATGAATACCTTAACAATTGCAATAGGTTCTTGGACTTTCCCCAAGAAATTCCTATTCTTTATGATGCAATTTCACAGCCTCTGATGGGTCTTTCTCTTGCACCACCACATGATGTTTATGCACCAGTGGTAGTAAATCCTAGGCTTCAAGATGAGCTTTCACACATTGCTAGAGCTGAGAATGATCATCATGATACTAATCATAAAATTGTTGTTGGTGATAACAAGGAGCAAAAGATTACCAACAAAGTCAAAGGCAAATGGACTCCAGAAGAAGATAGGGTTCTAATTGAATCAGTGAGACGCTTTGGGCTTAAAAGATGGTCTCGTATAGCCAAATTGCTGAATGGCAGAGTTGGGAAACAATGCAGAGAAAGATGGTTCAATCATCTCCGGCCAAACATTAGGAAAGACTCATGGTCTGAAGAAGAGGATTTGATACTTATTGAAGCTCACAAAAATGTTGGAAACAAATGGGCTGAAATTGCAAAGAGATTGATCGGAAGGACTGAGAACACTGTTAAGAACCATTGGAATGCAACTAAGAGGCGCTTGAACACAAAGAAGAGGATCAACAAGCGCATCAATCCAAGTGGAGAACTACTTATCAACTACATCAAGCAAGTTAGCCAAAATGGAAAATGA 1017 0.3854 MDFDPTFLYQFSDLSKIISEHSRNSEIPIMVPLQQTSTLVPPPPKNIYFYSPDNFHHSEINHPFNGVYHDPCFLKKSPSSSTNPLSMVQTLSLGNSYSNWSNNNFVNSNYPIGFAPNNDKMEASNEYLNNCNRFLDFPQEIPILYDAISQPLMGLSLAPPHDVYAPVVVNPRLQDELSHIARAENDHHDTNHKIVVGDNKEQKITNKVKGKWTPEEDRVLIESVRRFGLKRWSRIAKLLNGRVGKQCRERWFNHLRPNIRKDSWSEEEDLILIEAHKNVGNKWAEIAKRLIGRTENTVKNHWNATKRRLNTKKRINKRINPSGELLINYIKQVSQNGK* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1264 338 CDD SANT 211 255 IPR001005 -
Lan4g1264 338 Pfam Myb-like DNA-binding domain 212 269 - -
Lan4g1264 338 PANTHER MYB DOMAIN PROTEIN 100-RELATED 188 319 - -
Lan4g1264 338 Gene3D - 208 260 - -
Lan4g1264 338 Gene3D - 262 324 - -
Lan4g1264 338 PANTHER MYB PROTEIN-RELATED 188 319 - -
Lan4g1264 338 CDD SANT 263 306 IPR001005 -
Lan4g1264 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 206 259 IPR017930 -
Lan4g1264 338 SMART sant 260 308 IPR001005 -
Lan4g1264 338 SMART sant 208 257 IPR001005 -
Lan4g1264 338 ProSiteProfiles Myb-like domain profile. 256 306 IPR001005 -
Lan4g1264 338 SUPERFAMILY Homeodomain-like 206 302 IPR009057 -
Lan4g1264 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 260 310 IPR017930 -
Lan4g1264 338 ProSiteProfiles Myb-like domain profile. 204 255 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1264 Lan-Chr4 21241794 21244228 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1264 200 337 MYB Transcription Factor Family AT4G18770 60.870 1.88e-54 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan4g1264 Myb_DNA-bind_6 4.3e-16 CL0123