Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1262 ATGGAGGGAAAGGAGAATTTTTGTGGTGTTGGGCATGCTCATGCAGTTGTTGGTGGTGAAGCACCAGATAGCTTCCACGTGGCTCCAAGAATTGAGAACAACTTGGATTTTTCAATGGCCACAGTGCCAGTGCCGGCACTGGCAACGGAGGGGAAGAAAAAGAGAGGGAGGCCTAGGAAATATGGACCAGATGGGAAGGTGGCGGCCTTTCCTTTGTCTCCGATGCCGATTTCTTCATCGATTCCGTTGACCGGAGAGTTCTCAGCTTGGAAAAGGGGTGGAGGAAGGCCTGTTGAGTCTATCAAAAAGTCAACATATAAGTATGAAGTTGAAAGTCCAGGACCAGGCGAGGGAATTGCGTACTCAGTTGGTGCCAATTTCACAGCACACGTGCTTACAGTAAATGCTGGCGAGGATGTTACTATGAAGATTATGTCTTTTGCACAACAAGGATCATGTGCTATATGCATTCTCTCTGCAAATGGCTCAATTTCAAATGTTACACTTCGTCAACCAACTTCTTCAGGGGGTACTCTAACATATGAGGGACGGTTCGAGATTCTTTCCTTGTCTGGTTCCTTTATGCCAACTGATAATGGAATTGCGAGAAGCAGATCTGGCGGGATGAGTGTCTCTTTGGCAGGTCCAGATGGCCGAGTGATGGGGGGTGGACTTGCTGGTTTACTGATAGCTGCAGGTCCTGTGCAGGTTGTTGTGGGTAGTTTTCTTACAGGTCACCAGCTAGAGCATAAAAACAAGAAGCAGAGGTTGGAGCATATATCAACTATTACCACTACACATGTTAATCCTATCTCTAATGATGGCGGAATAAAATTCAGTTTCGGTGGATTTAAGCCTATTATGACACCTGCTGCTTTTCAAGAAGAGAATATAGCTTCTTATAACAATGTTCAAGACTCCAGGAACTCATCTGCTGATGATAAAGAAGCTTTTCTGGAGGACTCTAATCCAAGCCAATAA 981 0.4536 MEGKENFCGVGHAHAVVGGEAPDSFHVAPRIENNLDFSMATVPVPALATEGKKKRGRPRKYGPDGKVAAFPLSPMPISSSIPLTGEFSAWKRGGGRPVESIKKSTYKYEVESPGPGEGIAYSVGANFTAHVLTVNAGEDVTMKIMSFAQQGSCAICILSANGSISNVTLRQPTSSGGTLTYEGRFEILSLSGSFMPTDNGIARSRSGGMSVSLAGPDGRVMGGGLAGLLIAAGPVQVVVGSFLTGHQLEHKNKKQRLEHISTITTTHVNPISNDGGIKFSFGGFKPIMTPAAFQEENIASYNNVQDSRNSSADDKEAFLEDSNPSQ* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1262 326 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 12 317 IPR039605 GO:0003680
Lan4g1262 326 CDD DUF296 130 242 IPR005175 -
Lan4g1262 326 Pfam Plants and Prokaryotes Conserved (PCC) domain 129 242 IPR005175 -
Lan4g1262 326 MobiDBLite consensus disorder prediction 305 326 - -
Lan4g1262 326 Gene3D - 128 265 - -
Lan4g1262 326 ProSiteProfiles PPC domain profile profile. 124 263 IPR005175 -
Lan4g1262 326 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 12 317 - -
Lan4g1262 326 SUPERFAMILY AF0104/ALDC/Ptd012-like 126 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1262 Lan-Chr4 21204051 21208704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1262 52 255 AT-hook Motif Nuclear Localized (AHL) Family AT5G62260 64.651 1.65e-86 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1262 - - gmx:100789179 486.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0185 8 3138582 3143672 Lan4g1262 4 21204051 21208704 LSH
Lan20g0802 20 6978746 6983585 Lan4g1262 4 21204051 21208704 LSH
Lan8g1142 8 15407871 15414252 Lan4g1262 4 21204051 21208704 PCT
Lan4g1262 4 21204051 21208704 Lan8g1142 8 15407871 15414252 PCT