Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1249 ATGGCATTTCACGTAGCTTGTCCAATTACATGCCGCAGAATATGTTTCTGTCCGTTAGGGTTTCCTCGCGCTTCAAATAATGATGGCCTCTTCAACGACGTCGTTTCCAGGCTCGGTGTTTTCGTTTCCGATCCGTCTGGAATTAGGGTTAGCGGCGACCGTACTGTGCAGGTTGTTGTTCCTAAGGTTGTGCCACCGCCGCCGCCGCCACCGTCGCTGGTTTTGCCGACTTGCCATGTGGTGCCTGCCGCGGTTGGGGTTTCAGTTGCGGATTGTGATTTGGTGGTGGAGGAGGCGGCGTCGGCACAGGCGAAGAGGGCTGCGTTGCAGCGGAAAGGGGCTGCTGCTATGATTGCTGCTGAGGAGTATGCTCGCCGATTTGAGTCGCCGGAACTCGCTGATACTTCTGGAAACCTCACTGGAGAAGAACTGGGCCAATCAAATGTCAAAGTCTTTTGTCGAATGTGCAACCGTGTCGAAAATGAAGGAAGTGAGAGAGCTAAAAAGATGCTTTCTTGCAAAAATTGTAGTAAGAAATACCATAGGAACTGCTTGAGAAGTTGGGGTCAACATAGAGATTTATTTCACTGGAGTTCATGGACTTGTCGTGCTTGTCGAATTTGTGAGGCTTGCAGAAGGACTGGAGATCCAAGTAAGTTCATGTTCTGCAAAAGATGTGATGGTGCTTACCATTGTTATTGTCTGCATCCTCCTCATAAGAATATTAGTAATGGGCCCTATTTGTGCCCAAAACATACAAGGTGTCACAGTTGTGGGTCGAATGTCCCTGGAAATGGACTGAGTCTGAGGTGGTTTCTGGGATACACCTGCTGTGATGCCTGTGGAAGATTGTTTGGGAAAGGGAACTACTGTCCTGTTTGTTTAAAGGTTTATCGAGATTCAGAACCAACTCCCATGGTATGCTGTGATAGTTGCCAGCGCTGGGTGCATTGCCAGTGTGATAATATTAGTGATGAAAGATATCACCAATTTCAAGTGGACGGTAATCTGCAGTATAAATGTCCGACGTGTCGTGGGGAGTGTTATCAGGTCAGGGATCTTGAGGATGCTGTTCAGGAGCTTTGGAGGCGTAGAGATATTGATGACAGGGATTTAATTGCCAGCTTGAGGGCTGCAGCTGGCTTACCAACTCAAGAAGAAATATTTTCTATTTCACCGTATTCAGATGATGAGGATAGTGGACCTGGGCGTTCCTTTAAGTTCTCTCTGAAGAATTTCTCTGACAAATCACCAAAGACCACAGATTACAGAAAGAAATCTTCAAGCAAAAAACATTCTAAGAGAAAGGGCTCACAGTTGTTTATGAATGGTAAAACTGATCCACACCATAATTTTGAAGGACATATTGATGTCAAATCATTACAGAGTTTGGATAATGTTATCCAATCCCACAGAAATGAATCGCATGTTTATCCATCACCTGCTGCTGGAAACCTGAGCCAGACTGAAGGGTCTTACCCTGTCAGCCAGCCTGGGATTTCAAGACACAAGCCTGTGGACGATGTGATGGTTAGTGATGAAGAGAGGAAAAGCAGAGTTGTTCGAATTAAAAGCAATAAGGCACATGCTCTGGATAGCGAAGACGATAGTGGAAAACACAGCGATAAGAGTCAGAATGTGAAAGGGAAGAAGTTGGTTATAAATTTTGGGGCACGGAAAATTAATGTGGCTAGTTCTCCACGGTCTGATACTTCAAGCTGCCAAAGAGATAATCAATATCTGATTGCCCCTAATGGAAACAGAACTGACTCTGGTCAATCAAAAGTTTTAAAGGCTTCAGGAAGAGAAGGAAATTTCATTAAGCTGGGAAAATTGAAGTCAGAAGTTTCTCAATTGAATTCAACCTCTGTTAGAGGCAATGTGTTAGACGGTTGTGAAGCTGTTCATTCAGAGCGACCTCACATCATTTTAGGAAAAAAATGTACAGATGGAGTGATCAATCAAGTTGGAGCCATGGACGCTATGTCGAGAGGTGAAAGATTGTATTTGGGGAAGTTGTCAGAAGGCAGGTCTGATGCACATGATGATATAGATAACAATAATAATCAGAAACCTTCACATTCTTTGCCAAAAGACCCAAAACCTTCACTGAAAATTAAATTTAAGAAACCTCCAATTGAAAATGAAAACACAATTCACGGGGAGGAGGAGAAGATTACAATCAAGGGCCAGAGATCGAAAAGGAAGAGACCTTCACCTTTTATGGAGAAAAAACCGTTTAATGAGGATGATGATGTAGCGCAATCTCATCAAGACATGGATGTGAACTTGATATTGATGAAATTGGGTAAAGGTGCAATTGGAAAGAGAGTTGAAGTTCATCAGTCATCGGACAAGTCTTGGCACAAGGGAGTGGTTACTGACGTAGTTGATGGCACTTCAAAGTTACATGTTACCCTAGACGACGGGAGGGTAAATATCTTAGAACTCAGTAAGCAAGCGGTCCGTTTTGTTCCCCAGAAGGAGAAGAAATCGAAAAAATGA 2505 0.4383 MAFHVACPITCRRICFCPLGFPRASNNDGLFNDVVSRLGVFVSDPSGIRVSGDRTVQVVVPKVVPPPPPPPSLVLPTCHVVPAAVGVSVADCDLVVEEAASAQAKRAALQRKGAAAMIAAEEYARRFESPELADTSGNLTGEELGQSNVKVFCRMCNRVENEGSERAKKMLSCKNCSKKYHRNCLRSWGQHRDLFHWSSWTCRACRICEACRRTGDPSKFMFCKRCDGAYHCYCLHPPHKNISNGPYLCPKHTRCHSCGSNVPGNGLSLRWFLGYTCCDACGRLFGKGNYCPVCLKVYRDSEPTPMVCCDSCQRWVHCQCDNISDERYHQFQVDGNLQYKCPTCRGECYQVRDLEDAVQELWRRRDIDDRDLIASLRAAAGLPTQEEIFSISPYSDDEDSGPGRSFKFSLKNFSDKSPKTTDYRKKSSSKKHSKRKGSQLFMNGKTDPHHNFEGHIDVKSLQSLDNVIQSHRNESHVYPSPAAGNLSQTEGSYPVSQPGISRHKPVDDVMVSDEERKSRVVRIKSNKAHALDSEDDSGKHSDKSQNVKGKKLVINFGARKINVASSPRSDTSSCQRDNQYLIAPNGNRTDSGQSKVLKASGREGNFIKLGKLKSEVSQLNSTSVRGNVLDGCEAVHSERPHIILGKKCTDGVINQVGAMDAMSRGERLYLGKLSEGRSDAHDDIDNNNNQKPSHSLPKDPKPSLKIKFKKPPIENENTIHGEEEKITIKGQRSKRKRPSPFMEKKPFNEDDDVAQSHQDMDVNLILMKLGKGAIGKRVEVHQSSDKSWHKGVVTDVVDGTSKLHVTLDDGRVNILELSKQAVRFVPQKEKKSKK* 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1249 834 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 285 347 IPR013083 -
Lan4g1249 834 MobiDBLite consensus disorder prediction 679 705 - -
Lan4g1249 834 PANTHER HISTONE ACETYLTRANSFERASE 2 829 - -
Lan4g1249 834 MobiDBLite consensus disorder prediction 506 547 - -
Lan4g1249 834 Pfam PHD-finger 290 345 IPR019787 -
Lan4g1249 834 SUPERFAMILY FYVE/PHD zinc finger 197 258 IPR011011 -
Lan4g1249 834 SMART PHD_3 207 253 IPR001965 -
Lan4g1249 834 SMART PHD_3 290 345 IPR001965 -
Lan4g1249 834 SMART PHD_3 152 206 IPR001965 -
Lan4g1249 834 MobiDBLite consensus disorder prediction 475 549 - -
Lan4g1249 834 SUPERFAMILY FYVE/PHD zinc finger 145 206 IPR011011 -
Lan4g1249 834 MobiDBLite consensus disorder prediction 728 748 - -
Lan4g1249 834 ProSiteProfiles Zinc finger PHD-type profile. 150 208 IPR019787 -
Lan4g1249 834 ProSitePatterns Zinc finger PHD-type signature. 153 205 IPR019786 -
Lan4g1249 834 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 262 IPR013083 -
Lan4g1249 834 SUPERFAMILY FYVE/PHD zinc finger 287 346 IPR011011 -
Lan4g1249 834 MobiDBLite consensus disorder prediction 391 453 - -
Lan4g1249 834 PANTHER PHD FINGER FAMILY PROTEIN 2 829 - -
Lan4g1249 834 ProSiteProfiles Zinc finger PHD-type profile. 288 347 IPR019787 -
Lan4g1249 834 MobiDBLite consensus disorder prediction 475 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1249 Lan-Chr4 20710575 20720332 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lan4g1249 PHD 7.2e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1249 - - mtr:MTR_4g037745 1084.71