Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1248 ATGGATGAATACTTTTGTGATGCTTACCCTGACCCTTACACTATTGACCTTGTCTCAGAAAAACCATCTTCTCCTAAAGATCAGTGCTTCAATGTAGAGATCAAACACACAGAAACCCATGTTCTAAATGCAAGGAAGTTTGAAACTTTTGAAGAATCGAAATACCACAGTTTCAAGAATATTTCAAAGGATGAAATGATGCAAGAAACAACCATCTTAGGTTGGCTTTCTTCTATGACTGTGCCTAAAGATGCTCACAAGGTTATGGTTGCAAAGATCTTGGATTGTGCACGTGGAATGACTCTTTGGACTCACAAAGACAAAAGGGTTTTGTATATACGTGTTGATATTACCATCACTATAGCCACCGAAGAGTGCCACGACAATGATGATGATGATAATGATGATATTGATGATAGTGATGACAATAATGATAATGATTATGACGAAGATGATCAAGAACTTCGGTTCGTGCCAGCATCTAATTCATCAATTGAGAGTTTGGAGACAGTTAATGAACAAGAAGGATGTGTGAATTATAGAAAATGTGCTATTTGTTTTGAAGATATTAATGTTGTTAGTGTTCAAATGCCATGTTTGCATAAGTTTCATAAGAACTGCATTGTTGATTGGTTGAATATTAGTGCCTTTTGCCCTTTGTGTCGGTTTCTGATGCCAACTGAGAAAGGTGAAAAAGACTGCTAG 705 0.366 MDEYFCDAYPDPYTIDLVSEKPSSPKDQCFNVEIKHTETHVLNARKFETFEESKYHSFKNISKDEMMQETTILGWLSSMTVPKDAHKVMVAKILDCARGMTLWTHKDKRVLYIRVDITITIATEECHDNDDDDNDDIDDSDDNNDNDYDEDDQELRFVPASNSSIESLETVNEQEGCVNYRKCAICFEDINVVSVQMPCLHKFHKNCIVDWLNISAFCPLCRFLMPTEKGEKDC* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1248 234 SMART ring_2 183 221 IPR001841 -
Lan4g1248 234 SUPERFAMILY RING/U-box 182 227 - -
Lan4g1248 234 Pfam Ring finger domain 182 222 IPR001841 -
Lan4g1248 234 PANTHER F6A14.12 PROTEIN-RELATED 44 227 - -
Lan4g1248 234 ProSiteProfiles Zinc finger RING-type profile. 183 222 IPR001841 -
Lan4g1248 234 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 44 227 - -
Lan4g1248 234 Pfam Regulator of volume decrease after cellular swelling 105 168 IPR039924 -
Lan4g1248 234 MobiDBLite consensus disorder prediction 128 153 - -
Lan4g1248 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 227 IPR013083 -
Lan4g1248 234 MobiDBLite consensus disorder prediction 128 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1248 Lan-Chr4 20708115 20708819 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1248 117 226 C3H Transcription Factor Family AT1G14200 30.469 1.12e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1248 - - lang:109344708 451.825