Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1239 ATGGAGGATCACCACCAGAAGGGTAAGCAGAGTAAGGAGGAGGAGGTGAAGTACCGAGGCGTCCGAAGGCGGCCGTGGGGGAAGTATGCGGCCGAGATAAGAGATCCATCAAAGCCAGGGACAAGGCTATGGTTGGGAACATTTGATACAGCTGAAGAAGCAGCTAGGGCTTATGATAGGGCAGCCTTTAACTTAAGGGGTCATCTTGCAATTCTCAATTTTCCCAATGAATACTATTCTAAAATAAGGGGCTCACCACCTTATCCACCCCATTTAGCATCACCCACCTCTTCTCCTTCTTCTTCTTTTCATGCAAGTGGTAGTGGAAATTCTTCTTCAGCTGGTTCACAACATAGGCATGTTTTTGAGTTTGAGTACTTGGATGATAAGGTTTTGGAAGATCTTCTTGAGTTAGAAGAGCAGAAGAAGAAAAAGTAA 438 0.4521 MEDHHQKGKQSKEEEVKYRGVRRRPWGKYAAEIRDPSKPGTRLWLGTFDTAEEAARAYDRAAFNLRGHLAILNFPNEYYSKIRGSPPYPPHLASPTSSPSSSFHASGSGNSSSAGSQHRHVFEFEYLDDKVLEDLLELEEQKKKK* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1239 145 CDD AP2 17 76 IPR001471 GO:0003700|GO:0006355
Lan4g1239 145 PANTHER ETHYLENE RESPONSE FACTOR 4 140 - -
Lan4g1239 145 SMART rav1_2 17 81 IPR001471 GO:0003700|GO:0006355
Lan4g1239 145 MobiDBLite consensus disorder prediction 1 21 - -
Lan4g1239 145 SUPERFAMILY DNA-binding domain 17 76 IPR016177 GO:0003677
Lan4g1239 145 Gene3D AP2/ERF domain 16 76 IPR036955 GO:0003700|GO:0006355
Lan4g1239 145 PANTHER DNA-BINDING DOMAIN 4 140 IPR044808 GO:0003700|GO:0009873
Lan4g1239 145 MobiDBLite consensus disorder prediction 83 116 - -
Lan4g1239 145 MobiDBLite consensus disorder prediction 95 116 - -
Lan4g1239 145 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Lan4g1239 145 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Lan4g1239 145 ProSiteProfiles AP2/ERF domain profile. 17 75 IPR001471 GO:0003700|GO:0006355
Lan4g1239 145 Pfam AP2 domain 17 68 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1239 Lan-Chr4 20314304 20314837 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1239 13 143 AP2-EREBP Transcription Factor Family AT3G23230 63.359 5.07e-51 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan4g1239 AP2 1.1e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1239 - - gmx:100793703 160.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g1247 5 26234872 26235911 Lan4g1239 4 20314304 20314837 PCT
Lan4g1239 4 20314304 20314837 Lan5g1247 5 26234872 26235911 PCT