Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1238 ATGGATAAAGAAGGACCAAAGGGAAGGGGCAAAGAAGATAGCGGAGATGTCCGTTATAGAGGCGTACGCCGTCGTCCGTGGGGGAAGTTTGCGGCGGAGATTCGGGACTCAGCGAGGCAGGGTCAGAGGGTGTGGCTTGGAACTTTCAACACAGCAGAGGAAGCAGCCAGAGCCTATGATAGAGCTGCTTATACTATGAGAGGTTCATTTGCAATTCTCAACTTCCCAAATGAATACTCTATGCCAGGTGTTGGTAGTGGAGGTAGTGGTAGTGCTCATTCTTCTGCTGCTTCATCATCTTCTTCCTCTTCTTCTTCAAGGCATGGCAATGTGGAAGTAAGAGAAGTGTTTGAGTTTGAGTACTTGGATGACAAATTGTTGGAGGAGATGCTTGATTATGAAGAGAAAAAGAAAAAGGGGCACTGA 426 0.4718 MDKEGPKGRGKEDSGDVRYRGVRRRPWGKFAAEIRDSARQGQRVWLGTFNTAEEAARAYDRAAYTMRGSFAILNFPNEYSMPGVGSGGSGSAHSSAASSSSSSSSSRHGNVEVREVFEFEYLDDKLLEEMLDYEEKKKKGH* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1238 141 PANTHER ETHYLENE RESPONSE FACTOR 7 135 - -
Lan4g1238 141 Pfam AP2 domain 18 68 IPR001471 GO:0003700|GO:0006355
Lan4g1238 141 SMART rav1_2 18 82 IPR001471 GO:0003700|GO:0006355
Lan4g1238 141 MobiDBLite consensus disorder prediction 87 110 - -
Lan4g1238 141 MobiDBLite consensus disorder prediction 1 20 - -
Lan4g1238 141 MobiDBLite consensus disorder prediction 82 110 - -
Lan4g1238 141 Gene3D AP2/ERF domain 17 77 IPR036955 GO:0003700|GO:0006355
Lan4g1238 141 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
Lan4g1238 141 CDD AP2 18 77 IPR001471 GO:0003700|GO:0006355
Lan4g1238 141 PANTHER DNA-BINDING DOMAIN 7 135 IPR044808 GO:0003700|GO:0009873
Lan4g1238 141 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Lan4g1238 141 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Lan4g1238 141 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1238 Lan-Chr4 20291345 20291948 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1238 13 138 AP2-EREBP Transcription Factor Family AT3G23230 62.992 3.71e-45 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lan4g1238 AP2 7.1e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1238 - - gmx:100775830 191.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan20g0856 20 8023191 8023843 Lan4g1238 4 20291345 20291948 LSH