Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1237 ATGGATCTTGTAAGCAAAAGATACTTGATCTATTCATCATCACAAGCACTTTCACCAATCACAAGTCAAGGGAGTTCTTCAATTTTTCACCCTCATATGCATCATTCAAGCACAAGTTTCCCCATCATAGCAATTGCAATAATAGGAATATTAGCCACAGCTTTCTTGCTTGTGAGCTACTACATCTTTGTGATCAAATGCTGCCTCAATTGGCACCGCATTGACATCCTAAGACGTTTCTCTCCATCAACAAGGCGCGAAGACACGTCGCCTATATACTCTCCAGGGACCGAACCTCGCGGCCTAGACGAGGCAGTGATCAGATTAATCCCATTGATTCAATACAAGAGACAACAAGAAGAAAGTAGTAGTAGCATTGGTAATAGAGAATTTGGAGAAAGAAACTTTTGTGAGTGTGCTGTTTGTTTGAATGAGTTTCAAGAAGATGAGAAGCTTAGGATTATACCAAATTGCAGCCATGTGTTTCACATTGATTGCATAGATGTTTGGCTTCAGAACAATGCAAATTGTCCACTTTGTAGAACAAGCATATCTTTAACAAGCAGATTCCAAATTGATCAGCTTCTAAACACAAGCACTACTACTTCTTCTCCTCAACACCAAAACTCCAACATTAGTGTTGACCAAGATTTTGTTGTGATTGAATTGGGCAATAATGATAATGATAGAAACCAAAACAATGCTTTAGAGTTACCAACAACATGCCCTATTATTAGTCCTTCACCAAGGAAGTTAGAGCAAAGAAAAAAATCAAGGAAGCTGCATAATAAAGTGACAAGCATGGGAGATGAGTGGATTGATATTAGAGCCAAAGATGAACAGTTTTCAGTGCAACCTATAAGGAGGTCTTTTTCAATGGATTCATCAGGGGACAGACACTACTATTTGGCAGTTCAAGAAGCATTGCAGCATCAGAATAAGCAAGTTATTAATGAGGTTAACTTCATTGAAGAATGCAGTGGTAGTAGTAGAGCCAAAAGATCATTCTTTTCCTTTGGATATGGAAGTAGATCCAGAAGTTCTGTGCAACCTATTCATTTAGACCCCTGA 1071 0.3866 MDLVSKRYLIYSSSQALSPITSQGSSSIFHPHMHHSSTSFPIIAIAIIGILATAFLLVSYYIFVIKCCLNWHRIDILRRFSPSTRREDTSPIYSPGTEPRGLDEAVIRLIPLIQYKRQQEESSSSIGNREFGERNFCECAVCLNEFQEDEKLRIIPNCSHVFHIDCIDVWLQNNANCPLCRTSISLTSRFQIDQLLNTSTTTSSPQHQNSNISVDQDFVVIELGNNDNDRNQNNALELPTTCPIISPSPRKLEQRKKSRKLHNKVTSMGDEWIDIRAKDEQFSVQPIRRSFSMDSSGDRHYYLAVQEALQHQNKQVINEVNFIEECSGSSRAKRSFFSFGYGSRSRSSVQPIHLDP* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1237 356 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 186 IPR013083 -
Lan4g1237 356 SUPERFAMILY RING/U-box 138 187 - -
Lan4g1237 356 Pfam Ring finger domain 138 181 IPR001841 -
Lan4g1237 356 CDD RING-H2_PA-TM-RING 138 181 - -
Lan4g1237 356 ProSiteProfiles Zinc finger RING-type profile. 139 181 IPR001841 -
Lan4g1237 356 PANTHER RING-H2 FINGER PROTEIN ATL16 15 355 - -
Lan4g1237 356 SMART ring_2 139 180 IPR001841 -
Lan4g1237 356 PANTHER RING-H2 FINGER PROTEIN ATL16 15 355 IPR044600 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1237 Lan-Chr4 20266183 20267985 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1237 31 356 C3H Transcription Factor Family AT1G04360 50.139 9.36e-99 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1237 - - gmx:100775286 496.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g1231 11 18117704 18119314 Lan4g1237 4 20266183 20267985 LSH
Lan20g0857 20 8028436 8029666 Lan4g1237 4 20266183 20267985 LSH