Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1233 ATGGCTCATCCTTGGTGGACGAGTCAGGTGGGGTTATCTAGGGTTGACCACCCAGGAACCCATTCACCTGTCATCATTACCAAACTCCATACTGACCTCACAATCAACGAAACAAGTAGTGGTGGCAACAATCGAGATCTAGAGGATGAAGACAACAACGGAGAAGATCAAGAACCAAAAGAGGGTGCAGTTGAAGTTGGAAACCGTAGACCAAGAGGAAGACCAGCTGGATCAAAGAACAAACCAAAACCACCAATCTTTGTTACAAGGGACAGCCCAAATGCCCTAAAAAGCCATGTATTGGAGGTAGCTTCTGGTGCTGATATTGCTGAATGTATAGCACAATTTGCAAGGAGGCGCCAGTGTGGGGTATGTGTCCTTAGTGGGAGTGGATCTGTGGCTAATGTCACCCTTAGACAATCATCTGCTCCTGGTGATGCTGTTTCACTTCATGGCAGGTTTGAGATCCAAACCTTAATAGGTGCTTTCTTACCTGGACCTTCCCCTCCAGGGTGCACCGGGCTCACGGTGTACCTTAATGGAGGGGAAGGTCAGGTTTTGGGAGGAAGTGTTGTTGGGTCTTTAGTAGCTGCTGGACCTGTTATGGTCATTGCTGCTACTTTTTCTAATGCAACTTATGAGAGATTGCCACTTGATGATCATGATGATGAGGGGCCTAGTGGTGCTGGGACCACAGTGGTGCATGAAGGCGCTCCTGCAGCCGGTGGATCACCACCGCAGCTGCCGCAAATTGGAAGCATGAGTGGGGGTCAGTTGCAAGAAGCTGGTATTCCAGATCCATCAACATCTCTTCCTTTGTATAATCTGCCACCAAATCTGTTGCACAATGGAGGGCATATGGGACATGAAGCTTTTAATGCTTGGGCTAATGGAAGGACACCTTACTAA 909 0.4829 MAHPWWTSQVGLSRVDHPGTHSPVIITKLHTDLTINETSSGGNNRDLEDEDNNGEDQEPKEGAVEVGNRRPRGRPAGSKNKPKPPIFVTRDSPNALKSHVLEVASGADIAECIAQFARRRQCGVCVLSGSGSVANVTLRQSSAPGDAVSLHGRFEIQTLIGAFLPGPSPPGCTGLTVYLNGGEGQVLGGSVVGSLVAAGPVMVIAATFSNATYERLPLDDHDDEGPSGAGTTVVHEGAPAAGGSPPQLPQIGSMSGGQLQEAGIPDPSTSLPLYNLPPNLLHNGGHMGHEAFNAWANGRTPY* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1233 302 ProSiteProfiles PPC domain profile profile. 93 229 IPR005175 -
Lan4g1233 302 Gene3D - 97 223 - -
Lan4g1233 302 MobiDBLite consensus disorder prediction 35 91 - -
Lan4g1233 302 Pfam Plants and Prokaryotes Conserved (PCC) domain 98 210 IPR005175 -
Lan4g1233 302 SUPERFAMILY AF0104/ALDC/Ptd012-like 94 221 - -
Lan4g1233 302 PANTHER DNA-BINDING PROTEIN-LIKE 34 302 - -
Lan4g1233 302 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 34 302 IPR014476 GO:0003680
Lan4g1233 302 CDD DUF296 97 208 IPR005175 -
Lan4g1233 302 MobiDBLite consensus disorder prediction 248 265 - -
Lan4g1233 302 MobiDBLite consensus disorder prediction 216 270 - -
Lan4g1233 302 PIRSF ESCAROLA 14 302 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1233 Lan-Chr4 20208080 20209106 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1233 1 302 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 54.603 1.17e-92 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1233 - - lang:109359790 493.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g1239 11 18211759 18215941 Lan4g1233 4 20208080 20209106 LSH
Lan20g0863 20 8110130 8112054 Lan4g1233 4 20208080 20209106 LSH