Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1232 ATGAAGTCAGTGATAGAAGGAATCTCATCAGAGACATCTACTGAAGAAACTGATAATCAGAAAGAAGACCTAGATGACTCCATAACTTCCAAACGTTCATATGATTGCACATTCTGCAAGAGAGGCTTCACCAATGCTCAAGCTTTAGGGGGTCACATGAATATTCATAGAAAAGACAAAGCCAAGGCCAAACAAGGCATTTCAACAAAGAATTTATCTATGGCTCCTTCTTTTATTCCTCAAACCTCAACTTTTTACTCCATGTTTCAATCTCAAGGAAACTATGACATCCATTTTCAACCATCAACTATACCTAATTATCCCACAAACCCACCTGCATATGCCTTTCAATATGAGTTTATAAATCCAACAAGGTATGAATCTATGGGTGCAAATTATCAAGAGCTTTTGGGTTCCAACTTGAGTCTCCAAATTGCTTCAAGTCATGTGAGTAGTGATGAAGTTAGAAAAGGGATTCAGAATGATGAAGTTGTGGACTTAGAACTCAGGCTTAGCCATCATCCATACTCAAACTAG 537 0.378 MKSVIEGISSETSTEETDNQKEDLDDSITSKRSYDCTFCKRGFTNAQALGGHMNIHRKDKAKAKQGISTKNLSMAPSFIPQTSTFYSMFQSQGNYDIHFQPSTIPNYPTNPPAYAFQYEFINPTRYESMGANYQELLGSNLSLQIASSHVSSDEVRKGIQNDEVVDLELRLSHHPYSN* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1232 178 ProSiteProfiles Zinc finger C2H2 type domain profile. 34 61 IPR013087 -
Lan4g1232 178 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 12 175 - -
Lan4g1232 178 ProSitePatterns Zinc finger C2H2 type domain signature. 36 56 IPR013087 -
Lan4g1232 178 MobiDBLite consensus disorder prediction 1 26 - -
Lan4g1232 178 PANTHER OS07G0101800 PROTEIN 12 175 - -
Lan4g1232 178 Gene3D Classic Zinc Finger 10 83 - -
Lan4g1232 178 SUPERFAMILY beta-beta-alpha zinc fingers 29 61 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1232 Lan-Chr4 20199092 20199668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1232 19 71 C2H2 Transcription Factor Family AT3G09290 58.491 1.26e-17 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan4g1232 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1232 - - lang:109360170 278.87