Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1227 ATGGATTCAGATCAAGGTAAGTTATTCATCGGTGGAATTTCATGGGAAACTAATGAGGACAAGCTCAAGGAACATTTCACCAACTACGGCGACGTTTTGAACGCTTCTGTTATGCGTGACAAGAACACTGGAAAACCTAGAGGCTTTGGTTTTGTCGTATTTTCAGATCCTTCTATTCTCGATAGGGTTCTTCAAGATAAACATGTTATTGATGGCAGAACGGTTGATGCCAAGAGGGCCTTTTCAAGAGAGGATCAACAATTTTCTGGCAATTCCAGAGCTGGAAATCCCAATTCTGCTATCCATTCTGGAAATGGTGGAAGTACGAAGACTAAAAAGATATTTGTTGGGGGATTACCTCCTACCCTGTCTGAAGAACAGTTTCGTCAGTACTTTGAGACCTATGGCAATGTAACTGATGTAGTAGTCATGTACGACCAGAGTACTGGACGACCAAGAGGATTTGGGTTTATTTCCTTTGATACTGAGGATGCAGTTGATAGGGTTTTGCACAAGACATTTCATGATTTAAATGGTAAACAAGTAGAGGTGAAGCGTGCACTTCCCAAGGATGCCAACCCTGGTTCAGGTGGCCGGATGATGGGTGGTGCTGGAGGTGGTGGCTATCAGGGGTATGGAGCATCTGGTGGCAGCCAAAATGCATATGATGGTCGTGCGGATTCTAGCAGGTATATGCAATCTCAAAATGCTGCTGGTGGATTCACACCCTATGGTTCTTCTGGCTATAATGCCCCTGGGTATGGGTATGGTCCGGCTAATAATGGCATCGGTTATGGTGCATATGGAAGTTATGGTGGTGCCACTGCTGGGTATGGTGGACCCGCTGGTGCAACATATGGGAATCCTAATGTCCCTAATGCTGCTTATGCTGGTGGTCCCCCAGGTGGCCCACGGAGTTCATGGCCTGCTCAGGCTCCCTCTGGTTATGGGTCTATGGGCTATGGGAACACTGCTCCTTGGGGTGCTCAAAGTGGTGGCGTTGGATCTGGTGGGGGTGGCCCTGGTTCAGCTATTACTGGCCAATCTCCTAGTGGAGCTGCTGGATATGGGAGTCAAGGATATGGATATGGTGGGTACGATGGAAGTGACAGTTCTTATGGGAATCCTGGTGGTTATGGCGCTGTTGGAGGGCGTACTGGGAGTGCGTCCAATACTAATGCTAGTGGTCCTGGTGGAAGTGAACTACAAGGTAGTGGGGGCAGTGGAAGCTATATGGGCAGTGGTTATGGGGATGCAAATGGAAATTCAGGTTATGGCAATGCAGCTTGGAGATCTGAGCAATCTCAAGCCTCTGGAAATTATGGGACTCCTCAGGGAAACGGTTCACATGGTGGGCAAGTTGGTTATGGTGGTGGCTATGGCGGTGCTCAGTCTCGACAAGGCCAACAGCAGTAA 1416 0.4838 MDSDQGKLFIGGISWETNEDKLKEHFTNYGDVLNASVMRDKNTGKPRGFGFVVFSDPSILDRVLQDKHVIDGRTVDAKRAFSREDQQFSGNSRAGNPNSAIHSGNGGSTKTKKIFVGGLPPTLSEEQFRQYFETYGNVTDVVVMYDQSTGRPRGFGFISFDTEDAVDRVLHKTFHDLNGKQVEVKRALPKDANPGSGGRMMGGAGGGGYQGYGASGGSQNAYDGRADSSRYMQSQNAAGGFTPYGSSGYNAPGYGYGPANNGIGYGAYGSYGGATAGYGGPAGATYGNPNVPNAAYAGGPPGGPRSSWPAQAPSGYGSMGYGNTAPWGAQSGGVGSGGGGPGSAITGQSPSGAAGYGSQGYGYGGYDGSDSSYGNPGGYGAVGGRTGSASNTNASGPGGSELQGSGGSGSYMGSGYGDANGNSGYGNAAWRSEQSQASGNYGTPQGNGSHGGQVGYGGGYGGAQSRQGQQQ* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1227 471 MobiDBLite consensus disorder prediction 84 110 - -
Lan4g1227 471 MobiDBLite consensus disorder prediction 390 450 - -
Lan4g1227 471 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 469 - -
Lan4g1227 471 SUPERFAMILY RNA-binding domain, RBD 3 108 IPR035979 GO:0003676
Lan4g1227 471 MobiDBLite consensus disorder prediction 81 113 - -
Lan4g1227 471 Gene3D - 104 229 IPR012677 -
Lan4g1227 471 SUPERFAMILY RNA-binding domain, RBD 110 218 IPR035979 GO:0003676
Lan4g1227 471 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Lan4g1227 471 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 172 IPR000504 GO:0003723
Lan4g1227 471 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Lan4g1227 471 SMART rrm1_1 7 78 IPR000504 GO:0003723
Lan4g1227 471 SMART rrm1_1 113 185 IPR000504 GO:0003723
Lan4g1227 471 MobiDBLite consensus disorder prediction 390 471 - -
Lan4g1227 471 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Lan4g1227 471 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Lan4g1227 471 CDD RRM2_DAZAP1 110 189 IPR034131 GO:0003723
Lan4g1227 471 Gene3D - 4 88 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1227 Lan-Chr4 20140674 20159499 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1227 8 175 Eukaryotic Initiation Factors Gene Family AT2G36660 28.333 5.53e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1227 K14411 - gmx:100811267 558.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g1245 11 18341797 18345358 Lan4g1227 4 20140674 20159499 LSH