Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1214 ATGGATCAAGAAGAGGAGCATGAAGTATATGGCGCAGAAATCCCCGACGAAGTCGACATGGACGAACAACAACAACAACAACAACACAATCCCATCGATAACCCTAACAAGGAATTAGGAGACATGAAGAAGAGGCTGAAGCAGATCGAAGACGAAGCTGCAGCGCTTCGCGAGTTACAAGCCAAAGTTGAGAAAGAGATGGGCGCTGCTCAAGAGGACCCGGTTGGTTCTTCTGCAACTCAAGCTGAGAAGGAGGAAGTGGATGCTAGATCTATCTATGTTGGTAATGTTGATTATGCATGTACACCTGAGGAAGTCCAACAGCATTTTCAGTCATGTGGAACTGTGAACAGAGTCACAATATTGACAGATAAATTTGGTCAGCCAAAAGGATTCGCATACGTAGAGTTTGTTGAAGTTGATGCTGTTCAGAATGCTATCCTGTTGAACGAATCAGAATTGCATGGACGACAACTTAAGGTGTCTGCTAAGCGCACAAATGTCCCTGGAATGAAACAGTATTATGGAAGAAGACCTATGGGCTTCCGAGGTAGAAGGCCTTTCATGCCACCTCCTTTCTATCCTCCAGCTGGTTTTGGGTTTCCAAGGTATAGACGACCCACAAGATACCGGCCGTACTAG 642 0.4564 MDQEEEHEVYGAEIPDEVDMDEQQQQQQHNPIDNPNKELGDMKKRLKQIEDEAAALRELQAKVEKEMGAAQEDPVGSSATQAEKEEVDARSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVDAVQNAILLNESELHGRQLKVSAKRTNVPGMKQYYGRRPMGFRGRRPFMPPPFYPPAGFGFPRYRRPTRYRPY* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1214 213 SUPERFAMILY RNA-binding domain, RBD 80 188 IPR035979 GO:0003676
Lan4g1214 213 CDD RRM_II_PABPs 91 162 - -
Lan4g1214 213 PANTHER POLYADENYLATE-BINDING PROTEIN 1-LIKE 3 212 - -
Lan4g1214 213 MobiDBLite consensus disorder prediction 1 20 - -
Lan4g1214 213 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 3 212 - -
Lan4g1214 213 MobiDBLite consensus disorder prediction 65 84 - -
Lan4g1214 213 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 90 166 IPR000504 GO:0003723
Lan4g1214 213 SMART rrm1_1 91 162 IPR000504 GO:0003723
Lan4g1214 213 Coils Coil 32 73 - -
Lan4g1214 213 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 160 IPR000504 GO:0003723
Lan4g1214 213 Gene3D - 7 172 IPR012677 -
Lan4g1214 213 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1214 Lan-Chr4 19954477 19960837 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1214 91 162 Eukaryotic Initiation Factors Gene Family AT2G36660 36.842 8.41e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1214 K14396 - gmx:100527139 278.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan20g0881 20 8334111 8338724 Lan4g1214 4 19954477 19960837 LSH