Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1200 ATGAACAACACATCCAATTCTGAAAACCCTTCAGGTGAATCCAACTTATCTCATTATTCTGCTGCACTATGTGTTGGATTTCTCCTCCTCATCACATTAATGGCTCTCACTGCACATTGCTGTTCACATAGAAACTTGCAGAACACACAATCTACTAGAACTATAGCCATGGATAGAGATATTTCAGATATAAATATCCAAGTCCTTGGTGAAGAAGAATTTGAAGCAATAGTGAAAAATTATCCTGTGTTGTTGTACTCTCAAGCCAAGCTTGAAAATTCTTCATCAATTCTCAGTTGTACAATATGCTTAGCAGATTATAAGGATTCAGAATGGTTAAGGTTCTTACCAGATTGTGGTCACTATTTTCATAAGGATTGCATTGATATATGGTTAAGGGTAAATATGTCTTGCCCAGTTTGTAGAAAGTCTCTATTCACAACTCCTATTGCAGAAGTTGCAACTTTGGCTACAGGACTTGATTGA 486 0.3642 MNNTSNSENPSGESNLSHYSAALCVGFLLLITLMALTAHCCSHRNLQNTQSTRTIAMDRDISDINIQVLGEEEFEAIVKNYPVLLYSQAKLENSSSILSCTICLADYKDSEWLRFLPDCGHYFHKDCIDIWLRVNMSCPVCRKSLFTTPIAEVATLATGLD* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1200 161 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Lan4g1200 161 Pfam Ring finger domain 99 142 IPR001841 -
Lan4g1200 161 CDD RING-H2_PA-TM-RING 100 142 - -
Lan4g1200 161 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 1 151 - -
Lan4g1200 161 SUPERFAMILY RING/U-box 77 148 - -
Lan4g1200 161 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 148 IPR013083 -
Lan4g1200 161 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 151 IPR045899 -
Lan4g1200 161 SMART ring_2 100 141 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1200 Lan-Chr4 19366133 19366651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1200 19 157 C3H Transcription Factor Family AT5G06490 33.333 2.15e-26 97.4