Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1183 ATGTCAGATGTGGAGGAATATCGTTGCTTTATTGGTGGCCTTGCATGGTCAACATCTGATAGAAAGTTAAAGGATGCATTTGATAAGTTTGGCAAGCTTATTGAGGCAAAGGTGGTTGTTGACAAACTGTCTGGGCGATCTCGTGGTTTTGGATTTGTCACGTTTGATGAAAAGAAAGCAATGGAAGATGCTATTGATGCTATGAATGGAGTGGATTTAGATGGCCGAACTATTACTGTTGATAAAGCTCAGCCTCAACAGGGATCAGCTAGAGATGATGGTGATCGCTACCGAGACCGTGACCGAGGCCGTGACCGTGGCCGTGATCGCGATTATGGAGGTGGTCGAGGATCTAATGGTGGTGAATGCTTTAAGTGTGGTAAACCTGGTCATTTTGCTAGAGAATGCCCTAGTGAAGGGGAAAGTGGAGGAAGGTATGGTGGCAGGGAAAGTAAATATGGCGGAAGCAGTGCTGGTGGTCGCTATGGTCCTGATAGAAATGGAGATCGTTCATCTGGTGGGCGTAACAGGGATGCTGGTAGTCGTGGGGACTCTGGAAATGATCGGCATCATCGTGATCGTGATCGTTCTGGGCCATACGAACGTCGCTGA 612 0.4771 MSDVEEYRCFIGGLAWSTSDRKLKDAFDKFGKLIEAKVVVDKLSGRSRGFGFVTFDEKKAMEDAIDAMNGVDLDGRTITVDKAQPQQGSARDDGDRYRDRDRGRDRGRDRDYGGGRGSNGGECFKCGKPGHFARECPSEGESGGRYGGRESKYGGSSAGGRYGPDRNGDRSSGGRNRDAGSRGDSGNDRHHRDRDRSGPYERR* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1183 203 ProSiteProfiles Zinc finger CCHC-type profile. 123 138 IPR001878 GO:0003676|GO:0008270
Lan4g1183 203 SUPERFAMILY Retrovirus zinc finger-like domains 115 141 IPR036875 GO:0003676|GO:0008270
Lan4g1183 203 PANTHER TRANSFORMER-2-RELATED 1 168 - -
Lan4g1183 203 MobiDBLite consensus disorder prediction 77 124 - -
Lan4g1183 203 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 79 IPR000504 GO:0003723
Lan4g1183 203 MobiDBLite consensus disorder prediction 88 115 - -
Lan4g1183 203 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Lan4g1183 203 SMART rrm1_1 8 81 IPR000504 GO:0003723
Lan4g1183 203 Gene3D - 2 118 IPR012677 -
Lan4g1183 203 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 1 168 - -
Lan4g1183 203 SUPERFAMILY RNA-binding domain, RBD 4 117 IPR035979 GO:0003676
Lan4g1183 203 MobiDBLite consensus disorder prediction 136 203 - -
Lan4g1183 203 MobiDBLite consensus disorder prediction 168 203 - -
Lan4g1183 203 SMART c2hcfinal6 122 138 IPR001878 GO:0003676|GO:0008270
Lan4g1183 203 Pfam Zinc knuckle 122 138 IPR001878 GO:0003676|GO:0008270
Lan4g1183 203 Gene3D - 119 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1183 Lan-Chr4 18950272 18952975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1183 3 65 C2H2 Transcription Factor Family AT2G19380 38.095 4.55e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1183 - - gmx:100815224 282.337