Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1180 ATGGAAGCAACAGAGGAAGTCTCTTTGGGTGGGACCAAAGAGCAAATCAACATTGTCAAAGGGAAAAGAACCAAAAGGGTAAGGCCACAATCCCCCATCCCCTTCTCCATGACTGCTATTTTTTCCACCGGAGAAGGAGAAAAAAGGTATCACAACACTTCAAATCTTTTGGGAGGAGTCGAACCTGTCGCGACCCAATTTTCGGTTGGAAACCAGTTCTACAACATCAAAGACAATAACGATAACAACAGCAGCAACACCCCCACCACTTCTTCTGGAGGGTTACAAGACAGCACCAATGAAGAAGAGGATATGGCCAATTGCCTGATCCTTCTAGCACAAGGACAATCCCGGGAATCCCCCAAACATGCCGCGGCCGATGGCCGCGAAGACTTGACCACCGGAGGCATGAATTACAGTAAGTACAGCAGTAAAAAATTCTTGGAAGCAGCTGGTATAGGGTCTGGAAGAGCAGGGTATTATGTATATGAATGCAAGACATGTAATAGAACTTTCCCTTCATTTCAAGCACTTGGAGGCCACAGGGCTAGTCACAAGAAGCCTAAGGCCATTAGTACTCAAGAGAAAAAGCAACAACATTTTTTGTTCTCTTCAGATGAGGAAGAGTTTCAATTCAAGACCAATAATAATAGACCAATTTCTCTTCAATTCAATATCAGAGGGAATTTGTATAGCACTAACAACAATAAGTGTAAGGTACATGAGTGTTCCATTTGTGGTGCTGAATTCACATCAGGGCAAGCATTGGGTGGCCATATGAGACGGCACCGAGCTCCGGTTGGGACTAATACCACACTCTCTTTGACACCAATGGCTTTGGAACCAGAAGAAGATCAACAACCTAGAAAGAGAAGGAATGTGTTGCCTTTGAATTTGGATCTTAACCTTCCTGCACCAGAACCACAAGATTGTCCTACAGAATCCAAGTTTGCCTTAGCACCCAAGCAACAACAACAAGGACAAACACAACAACAACTACAACAACAACAACAGCAGCAACTGCAGCAACAGCAACAACAATCTAGTCTTGTCTTCTCAACCCCGTCTTTAGTGGATTGTCATTATTAA 1089 0.4389 MEATEEVSLGGTKEQINIVKGKRTKRVRPQSPIPFSMTAIFSTGEGEKRYHNTSNLLGGVEPVATQFSVGNQFYNIKDNNDNNSSNTPTTSSGGLQDSTNEEEDMANCLILLAQGQSRESPKHAAADGREDLTTGGMNYSKYSSKKFLEAAGIGSGRAGYYVYECKTCNRTFPSFQALGGHRASHKKPKAISTQEKKQQHFLFSSDEEEFQFKTNNNRPISLQFNIRGNLYSTNNNKCKVHECSICGAEFTSGQALGGHMRRHRAPVGTNTTLSLTPMALEPEEDQQPRKRRNVLPLNLDLNLPAPEPQDCPTESKFALAPKQQQQGQTQQQLQQQQQQQLQQQQQQSSLVFSTPSLVDCHY* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1180 362 ProSitePatterns Zinc finger C2H2 type domain signature. 165 185 IPR013087 -
Lan4g1180 362 MobiDBLite consensus disorder prediction 256 291 - -
Lan4g1180 362 Pfam C2H2-type zinc finger 162 188 - -
Lan4g1180 362 Pfam C2H2-type zinc finger 240 266 - -
Lan4g1180 362 SMART c2h2final6 163 185 IPR013087 -
Lan4g1180 362 SMART c2h2final6 241 263 IPR013087 -
Lan4g1180 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 241 263 IPR013087 -
Lan4g1180 362 SUPERFAMILY beta-beta-alpha zinc fingers 162 263 IPR036236 -
Lan4g1180 362 PANTHER ZINC FINGER PROTEIN ZAT5 13 362 - -
Lan4g1180 362 MobiDBLite consensus disorder prediction 74 100 - -
Lan4g1180 362 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 13 362 - -
Lan4g1180 362 MobiDBLite consensus disorder prediction 319 350 - -
Lan4g1180 362 ProSitePatterns Zinc finger C2H2 type domain signature. 243 263 IPR013087 -
Lan4g1180 362 Gene3D Classic Zinc Finger 161 263 - -
Lan4g1180 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 163 190 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1180 Lan-Chr4 18895441 18897011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1180 1 362 C2H2 Transcription Factor Family AT5G04390 41.500 1.81e-75 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan4g1180 zf-C2H2_6 7.3e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1180 - - vra:106771093 405.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g1180 4 18895441 18897011 Lan4g1180 4 18895441 18897011 ECH
Lan5g1146 5 24766127 24767235 Lan4g1180 4 18895441 18897011 ECH
Lan7g0326 7 2198645 2200458 Lan4g1180 4 18895441 18897011 ECH
Lan11g1301 11 19190005 19191620 Lan4g1180 4 18895441 18897011 LSH
Lan20g0909 20 8658943 8660412 Lan4g1180 4 18895441 18897011 LSH