Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1174 ATGGGCCACGAAACCCATCTCCTCCCACCACCACCAACAACCCCGTCCACTGCCACTTACACCTCTCCACCACCACTTCCACTCTCAGTGGTGGCGCCGCGGCTGTCATCAGCTGCATCCGGGTCAACATCACTCATAGTTGCAGGTGCAGCTTCATCCACGCCTTCTCCTACTTCTCTTGCTCCTGGGTTCAGGTTTCACCCCACTGATGAAGAGCTTGTTATTTATTATCTAAAGCGTAAGGTTGGTGGGAAAAGCTTCCGATTTGATGCCATATCGGAGGTGGACATTTACCACAGCGAGCCTTGGGACCTTGCAGATAAGTCAAGGTTGAAGACAAGGGACCAGGAATGGTATTTCTTTAGTGCATTGGACAAGAAATATGGAAATGGTGGTAGAATGAATAGAGCCACAAACAAAGGGTACTGGAAAGCCACTGGGAATGACCGTCCAGTGATGCATGAACAAAGGACTGTGGGTTTGAAGAAAACTTTGGTGTTTCATAGTGGTCGTGCTCCGGACGGGAAGAGGACCAATTGGGTCATGCATGAGTACAGACTTGTTGATGAAGAGCTGGAGAAGGCTAGGACTGCAAATGGGTCCACTCAGGATGCATTTGTTTTGTGTAGAATATTTCACAAGAATAACATAGGACCTCCAAATGGACAACGGTATGCACCTTTCGTCGAAGAGGAGTGGGATGATGAGCCAGGACTAGTTCCTAGGGCAAAGTCCGCAGAACCCATTCCCATTTCCCAACAACCGTGTGTTGACCGTGTTTTATGTATTGAAGGGAGAAAAGATGTTGAGCAGGATACTCAGTCTGTTACCAAGGCTCCATTTGATGTCAACAAACTTCCTATAGAGACTCAAAATCTTCTGGCTGTCTGCAAGAGGGAGAGTATGGCCGAGTTCTCATCACCAGAAAAAGAGGACTCTAAGCTTATGCCAGACGAGTATCCTTCACCCCAACCAGATAATCACAAGGCTTTCTCTCAAATATACAAAAGAAGGCGGTATAACTTGAACAACCATTTGAATGCTTCTGGAGATTCAATCCGAACCAGCCAGGATCCGTGCTCGTCGACAATAACCACTGCTGCAACAACACTCCCAACGGAAACTGCCTTCACCAACCCCACGACAACCAACACTGCGCCAAAAAAACATTTTCTGTCTGCACTGGTGGAGTTTTCTCTGATGGAATCTCTTGAATCGAAGGAAGTTCAATCGCCAGATTTTAATGCTGATAATCTCGAGTTAACCGTGCCTCCTAGCTCGGTAAAATTCATCAAACACTTGCAGAGTGAGATGCAAAAGCTTTCTGTTGAAAAGGAGGCTATGAGGTTTGAGATGATGAGTTCTCAAGCTATGGTTAACATTCTCCAGTCTCGCATCGATCATCTGAACAAAGAAAATGAGGAATTGAAGAAGATGGTCTGA 1443 0.4643 MGHETHLLPPPPTTPSTATYTSPPPLPLSVVAPRLSSAASGSTSLIVAGAASSTPSPTSLAPGFRFHPTDEELVIYYLKRKVGGKSFRFDAISEVDIYHSEPWDLADKSRLKTRDQEWYFFSALDKKYGNGGRMNRATNKGYWKATGNDRPVMHEQRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRLVDEELEKARTANGSTQDAFVLCRIFHKNNIGPPNGQRYAPFVEEEWDDEPGLVPRAKSAEPIPISQQPCVDRVLCIEGRKDVEQDTQSVTKAPFDVNKLPIETQNLLAVCKRESMAEFSSPEKEDSKLMPDEYPSPQPDNHKAFSQIYKRRRYNLNNHLNASGDSIRTSQDPCSSTITTAATTLPTETAFTNPTTTNTAPKKHFLSALVEFSLMESLESKEVQSPDFNADNLELTVPPSSVKFIKHLQSEMQKLSVEKEAMRFEMMSSQAMVNILQSRIDHLNKENEELKKMV* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1174 480 Coils Coil 431 451 - -
Lan4g1174 480 PANTHER NAC DOMAIN-CONTAINING PROTEIN 78-LIKE 52 480 - -
Lan4g1174 480 Coils Coil 459 479 - -
Lan4g1174 480 MobiDBLite consensus disorder prediction 304 327 - -
Lan4g1174 480 Gene3D NAC domain 69 217 IPR036093 GO:0003677|GO:0006355
Lan4g1174 480 MobiDBLite consensus disorder prediction 1 22 - -
Lan4g1174 480 SUPERFAMILY NAC domain 58 215 IPR036093 GO:0003677|GO:0006355
Lan4g1174 480 ProSiteProfiles NAC domain profile. 60 214 IPR003441 GO:0003677|GO:0006355
Lan4g1174 480 Pfam No apical meristem (NAM) protein 62 187 IPR003441 GO:0003677|GO:0006355
Lan4g1174 480 MobiDBLite consensus disorder prediction 8 22 - -
Lan4g1174 480 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 52 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1174 Lan-Chr4 18813187 18818219 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1174 395 478 NAC Transcription Factor Family AT3G10480 47.727 1.61e-13 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lan4g1174 NAM 3.9e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1174 - - gmx:100808783 650.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g1174 4 18813187 18818219 Lan4g1174 4 18813187 18818219 ECH
Lan11g1302 11 19195675 19200598 Lan4g1174 4 18813187 18818219 LSH
Lan20g0911 20 8686619 8692630 Lan4g1174 4 18813187 18818219 LSH