Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1162 ATGACAGATTTTCAGCATTTACAAAAGAAGCCTGAACCTGAACCGGCTGAGGCTCGTGCCGAGTATGAGTGTGGGCTGGAGGAGTTTATGCATGGTCAATTGGATGATTGTATTTCATTTGCTTCATGTAGCTCTTCTCGTGCTCAAGATGATGAGGATGAGGAGGGTGATCAGCTGATAAGGAGGAGACGGAGGTCTGATCTTGAAGGGGATGATTTGGCAGAGTCATCAGCTGCGCGGAGGCGCCATTCACGGATTTTGGGTAGATGGGCTGCCCGACAGGCGCAGGAGATGATGACAACTATTGAGAGGAGGAATCGGGAATCCGAGTTGATGGCGCTTGCGGGATTACATACGGTCTCGATGTTGGACTCTTCTTTTCTGAGGGGATCACAATCTCCGACTTCTGGACGGGAGGGGGCTGTTGAGCGGCCGAGCACTCAGTCATCTGCCATTCTGCAGATGTGGCGTGAATTGGAGGATGAGCATTTATTGAATCGGGCACGTGAAAGGATGAGGGAAAGATTGCGGCAGCAAAGGAGTTCTGAGTCTGAGACCAATGTGTCAAGTACCATGTCTGACAGTCGAGGCACTGTGGATCAAAGGAGTTTGGGGGATGCAAGTGAAAGTGAAAATGATTATGGTACTTGGTCACACGATCACGTTGGACCACAGAATGCACATGGTGATGGCAATAGGTCTAGCCGGGAGCAATCTCCTGATCTTGGTGAAGTTGAGAGGGAGAGAGTTAGACAGATTGTTCGGGGATGGATGGAAAGTGGTATTAGTGATCATTCATCTAATGTGAGTCAGAGAAACAATAACCGTAGAGCAGAGTGGCTTGGAGAGACTGAGCGTGAGAGGGTAAGAATTGCGAGGGAGTCAGTGCAAATGACTAGCCAGCAGAGAGGTTCACGTGGGAGCCGGAGGGATGCTCAAGTGAGTGACGGTGGTCATAATGATGGCCATCCAGAGCATGTCCGCCGGGACATGTTGAGACTGCGTGGAAGACAGGCTATTGTTGATTTGCTTGTGAGGGTAGAAAGGGAACGACAGAGAGAGTTGCAGGGTTTGTTGGAGCACCGAGCTGTTTCTGATTTTGCTCATCGCAACCGCATTCAGGCATTGCTCAGAGGTAGATTCCTCCGAAATGAAAGACCTGTTGAAGATGAGAGGCCTCCTTCTGTGGCTGCTAGCGAATTAGTTCAGTTAAGACAACGACACACGGTCTCTGGTTTAAGGGAGGGGTTTCGCTCAAGATTAGAAACAATTGTTCATGGTCAAGCAGTCACCGATCCTGATGCCACACCTAACAGTAACATTAGTGAAACAAGAAGTGATGAGAACCAAGGAAACAATCTGATAGATGGCCAGCAAGTAAATTATGAACAAGAGCAGATTAGAAGCCTGGAAAGTGATGTGCGTCACTTGCCGAATCAAACAGGAGCTTTGGAGAGCAACACAAATGAAAATATTAGCTGGTTTGAAGCTAGAAATGAAAGAGGGAATTGGCAGGAACAAATTGCTGAAGATGGCGGAGGAAACTGGCAGCAGAGAACTGATCGTCCATTCAATCAGTCAAGAGATGGAAGCGCAGTCAGTGATTGGCCACAGGATACTATGAGAAATTTAGCTAGGGAAGACCTTCATCCACAAGAGGCTCAAAGAATTTGGCATGAGGACAGCACAAGGGAAACTGTTGGTAATTGGTCCGAAGGACTTCCTGAAGCTTCAAGGAATCAGCATGACATTCCATTTAGAAGAATCAATAGATTTCATCCTCCTGATGATGATAATGTGTACAGCATGGAGCTTAGAGAACTTCTGAGCAGGAGAAGTGTTTCTAACCTTCTTCGTAGTGGCTTCCGAGAAAGTTTGGACCATCTAATACAGTCGTATGTGGAAAGGCAAGGTCATGCACCAATTAACTGGGATTTTCACAGAAACTTGCCAACTCCAATTCCTGCCTCACCTGAACGGGACTCTGATCAGCAAGGTGATGAACTTAATCAGGGTGAACGTGTAGCCATTAACAGACCTTCACGGGTGATGCCTTCTCCACCTGTACCTCCACCACAACCACTGTGGCACCAGGATTTGCATCAAACTGGATGGTCTCGCCATAGCATGAATCGTTCTGAAATGGAATGGGATATGATGAATGATTTAAGATCTGATATGGCAAAACTTCATCAAGGCATGAATCACATGCAGAGGATGTTGGAGGCTTGCATGGATATGCAGCTGGAGCTGCAGCGCTCTGTCAGACAGGAAGTCTCTGCAGCTTTGAACCGATCAGCTGGTGAAAATGGATTGGGAGCTGAGACATCTGATGATGGGTCTAAATGGGGGCATGTAAAAAAAGGAACTTGCTGTGTTTGTTGTGATAGCCATATTGATTCCCTTTTATACAGATGTGGGCACATGTGTACTTGTTCAAAATGTGCCAATGAGTTAGTTCGTGGCGGAGGTAAGTGTCCTTTATGCCGAGCACCCATCGTTGAGGTGGTCCGAGCTTATTCCATACTGTAA 2532 0.4727 MTDFQHLQKKPEPEPAEARAEYECGLEEFMHGQLDDCISFASCSSSRAQDDEDEEGDQLIRRRRRSDLEGDDLAESSAARRRHSRILGRWAARQAQEMMTTIERRNRESELMALAGLHTVSMLDSSFLRGSQSPTSGREGAVERPSTQSSAILQMWRELEDEHLLNRARERMRERLRQQRSSESETNVSSTMSDSRGTVDQRSLGDASESENDYGTWSHDHVGPQNAHGDGNRSSREQSPDLGEVERERVRQIVRGWMESGISDHSSNVSQRNNNRRAEWLGETERERVRIARESVQMTSQQRGSRGSRRDAQVSDGGHNDGHPEHVRRDMLRLRGRQAIVDLLVRVERERQRELQGLLEHRAVSDFAHRNRIQALLRGRFLRNERPVEDERPPSVAASELVQLRQRHTVSGLREGFRSRLETIVHGQAVTDPDATPNSNISETRSDENQGNNLIDGQQVNYEQEQIRSLESDVRHLPNQTGALESNTNENISWFEARNERGNWQEQIAEDGGGNWQQRTDRPFNQSRDGSAVSDWPQDTMRNLAREDLHPQEAQRIWHEDSTRETVGNWSEGLPEASRNQHDIPFRRINRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDHLIQSYVERQGHAPINWDFHRNLPTPIPASPERDSDQQGDELNQGERVAINRPSRVMPSPPVPPPQPLWHQDLHQTGWSRHSMNRSEMEWDMMNDLRSDMAKLHQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGENGLGAETSDDGSKWGHVKKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVVRAYSIL* 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1162 843 MobiDBLite consensus disorder prediction 261 277 - -
Lan4g1162 843 MobiDBLite consensus disorder prediction 173 246 - -
Lan4g1162 843 MobiDBLite consensus disorder prediction 294 308 - -
Lan4g1162 843 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 775 841 IPR013083 -
Lan4g1162 843 MobiDBLite consensus disorder prediction 432 454 - -
Lan4g1162 843 MobiDBLite consensus disorder prediction 430 454 - -
Lan4g1162 843 MobiDBLite consensus disorder prediction 309 327 - -
Lan4g1162 843 SUPERFAMILY RING/U-box 790 836 - -
Lan4g1162 843 MobiDBLite consensus disorder prediction 44 80 - -
Lan4g1162 843 MobiDBLite consensus disorder prediction 511 536 - -
Lan4g1162 843 MobiDBLite consensus disorder prediction 650 669 - -
Lan4g1162 843 Pfam Zinc finger, C3HC4 type (RING finger) 788 835 - -
Lan4g1162 843 MobiDBLite consensus disorder prediction 54 80 - -
Lan4g1162 843 CDD mRING-HC-C3HC5_NEU1 790 830 - -
Lan4g1162 843 MobiDBLite consensus disorder prediction 182 212 - -
Lan4g1162 843 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 843 - -
Lan4g1162 843 MobiDBLite consensus disorder prediction 127 149 - -
Lan4g1162 843 MobiDBLite consensus disorder prediction 258 327 - -
Lan4g1162 843 ProSiteProfiles Zinc finger RING-type profile. 791 830 IPR001841 -
Lan4g1162 843 MobiDBLite consensus disorder prediction 278 293 - -
Lan4g1162 843 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 1 843 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1162 Lan-Chr4 18493293 18499300 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1162 773 837 C3H Transcription Factor Family AT3G06140 39.394 9.59e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1162 - - lang:109336295 1365.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g1162 4 18493293 18499300 Lan4g1162 4 18493293 18499300 ECH