Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1143 ATGGAAGCTCGCTCCACCTTCTCCTTTGAAAGAACAAGTGCGAAACAGCTCATGGGGATGTCTGGACCACTTTCTTCATCCTTTCCAGCACCAGTAGAAGCGACATGTCCTAAGTTCCCCGATTCACATCTGGCTTTGGTTGAAAAAGAGCATATGCCAAGACCTTTTTCTCATTCAAGTCATTTAAATTCCTGTGGAGTAGTTGGGCATATTTTTTCATCTTCCCCGGGATATTCAACTGATCTTCACCACTCATCCCTTTCACCTCATGAAAAACACTCCACAAATGCTCATTTCATTTCACAATTACCTACTAACTTAGATCCACTACCACTATCATATTTCAAAGAAAATAGTGCTTCCTGCCCTACAGATTCCATGCCTAGCTTTCTGAATTTTCCTGCAAATACCTCCATTGATAATAGTCAGGTAGAAATGAATAACTGCAATATCATGGCATCTGAGGAGTATTGTAAGCGAAATGATTGGCAGGAGTGGGCTGACCAGCTAATCAGTGATGATGATCCTTTGACTTCTAGTTGGAACGAACTTTTTCCTGAAGACATTCAAGATCTTGATCCAAAGGTTGCTTTTCAGGTTCCAAAACCATCTTCACAATTTCCAGAACATCAACCCCAACGCTACCAACAACTTTCTGCATTATCTGTAGAAAATTGCAATGGTGCTGCCCCCTCTTCTTCGGCAAATTCTGCTTCTGCCAAGCCACGAATGCGTTGGACACCAGAACTTCATGAGGCCTTTGTAGAGGCTGTCAACCAACTCGGTGGCAGTGAAAGAGCTACTCCTAAGGGTGTTCTGAAGCTTATGAAAGTTGAAGGATTAACTATATATCATGTTAAAAGCCACTTGCAGAAATACAGGACAGCTAGATATAGACCAGAGTCATCTGAAGGAGGGACAGAGAAAAATACAAGTTCAATTGATGATATCTCATCTCTAGATTTGAAAACTGGTATTGAGATCACTGAAGCTCTACGACTGCAGATGGAGGTTCAGAAGCGGTTACATGAACAACTTGAGATTCAAAGAAATCTACAGTTGCGAATAGAAGAACAAGGAAGGTACCTCCAGATGATGTTCGAGAAGCAATGTAAACCCGGCATTGAAACATTTAAGGCACCATCATCTACCACTGAGAACCCATCTGGAGTCTCTTTGGACTGTTGTAGGTCAGGACCTGATCAAGCTAATGGAACTACCGCAGCTGAGGAAGGGTCACTGGAAATGGGTGCAAAGCATGATTCTCCCAAAGGTCAACCTTCTGAGAATCCTAAGCAACATGTTATTGGTGGTGATGATAGTGCTCAAGCCTCAAAGCGTAAACGGACAAACGAGTAG 1359 0.426 MEARSTFSFERTSAKQLMGMSGPLSSSFPAPVEATCPKFPDSHLALVEKEHMPRPFSHSSHLNSCGVVGHIFSSSPGYSTDLHHSSLSPHEKHSTNAHFISQLPTNLDPLPLSYFKENSASCPTDSMPSFLNFPANTSIDNSQVEMNNCNIMASEEYCKRNDWQEWADQLISDDDPLTSSWNELFPEDIQDLDPKVAFQVPKPSSQFPEHQPQRYQQLSALSVENCNGAAPSSSANSASAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSEGGTEKNTSSIDDISSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKPGIETFKAPSSTTENPSGVSLDCCRSGPDQANGTTAAEEGSLEMGAKHDSPKGQPSENPKQHVIGGDDSAQASKRKRTNE* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1143 452 MobiDBLite consensus disorder prediction 378 452 - -
Lan4g1143 452 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 241 295 IPR006447 GO:0003677
Lan4g1143 452 Coils Coil 329 349 - -
Lan4g1143 452 Pfam MYB-CC type transfactor, LHEQLE motif 326 372 IPR025756 -
Lan4g1143 452 Pfam Myb-like DNA-binding domain 243 294 IPR001005 -
Lan4g1143 452 MobiDBLite consensus disorder prediction 295 314 - -
Lan4g1143 452 Gene3D - 240 299 - -
Lan4g1143 452 MobiDBLite consensus disorder prediction 378 392 - -
Lan4g1143 452 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 24 447 IPR044848 GO:0003700
Lan4g1143 452 SUPERFAMILY Homeodomain-like 239 295 IPR009057 -
Lan4g1143 452 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 238 298 IPR017930 -
Lan4g1143 452 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL4-RELATED 24 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1143 Lan-Chr4 17998217 18005611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1143 1 370 G2-like Transcription Factor Family AT4G28610 51.823 3.24e-101 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lan4g1143 Myb_DNA-binding 8.3e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1143 - - gmx:100810560 602.053