Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1140 ATGGCACCCAATCCAAAAGTAGTAGCTGCCTTTCGGGCAATGTCAGCTCTTGGCATAACTGAATCGCAAGTTAAACCAGTATTGAAGAAACTCCTTAAGTTGTATGATAAAAATTGGGAACTTATTGAAGAAGAGAATTATAGAGCTCTTGCAGATGCAATATTTGAGGCTGCCGAACATCCGGTGCCAGAACAGAAAAAGAAAAGCAAGAATGTTCATCAAGAAGAGATGGAGGATGAAGAAGCTCAGATGCATGTTGACTCAGCCCAACCTTTGAAAAGGTCGCATTTAAGAGTCCAAGACGGTCAGTCTTCGAATCCTCTTACTAATAGCAGCCCAGGCTCAGCCGCTTCTCCGTTAAAAAAGCCTAAATTAGAAGGGGACATATTACCTGAGAGTAGTTCCAGACAACGGCCTCAAAACACAGCAGTGTCATCTGATATAAATGCGAGGTCTGAGTCACGCCCAATTCCACCACATGATGGTACTGTTGACAGGGGAAAGCAACCTTTATCACCCCAAGTTGCCAGACGAAGAAGATTAATATCTGAAAGGGAAAGAGCAGCTTTATCAGCACAATCTAAAGAACCAACAGTTGAACCAGGAATGCGTCCCCTGCCAAACAACAAAATGCCTCATAGTCATGCAGTGATCATACCCAAGGACGAGCCTATTGACGAATTGCCTGATTATGCCGTTCCCGTTACAATGATTCCCCCTGAACCATCAAGCATGAGGAACTCGCCAATGATGAATGGCGCTGCGAGAAAGCGAGATGGCCATATCACCAAGGCATCATTGCAATTTAGAGATGAAACAGTTAGAGATGAAGATATCCATCCTTCCTCAAATGAAGAAGCAACTTCTAATGTAGAGATAGCCTCTTCAACTCTGGGAGAAGTAAAAATTTCTCTGAGGTGCAGCTTTGCTGTTGGTAGACCTGAATATCGTATGCCTAGTCAAGATCAAATTCTACAGATGATGGAGGAAAAATGTCTGCGGTCATATAAAATCACTGACCCAAATTTTTCTGTCCCGAAACTGTTGAAAGATATATGTGATTGCATGTTGGAATTCAGAAATGATTCAAATGATGACTCGCAGAAAAAGTCTTGGACAACGTCCAATGTTGATGTGATGAAGGAATCTGATGCTCATGGCATTCTAAGCAGCCGGGGAAATGAAGATCCAAACATGCTTTCTCACACTTCCAATGGATCAATCAATGTTAAGTCTTCTGCTGCCTTGGTTTCACCCCGAAGTCCCTTTTCTGTAGCGGAGGTGAGTGGTCTGGATGATGCTGTACGGGCTTCCTTAAAGGACAAAACAACCAATATCTTAGAAAGTAATTACAGTAAGGAGCCTGAGAATCTCATGTCTCCAAATTCACATAGTTTAGCAGTTGTTCCACAGCATAATCAGCTTACAGATATTAGGTCTATTCATGATGTTAATGATCTTACAAAAGGAGAAGAAATTGTTCAAATTCCATGGGTAAATGATACTACAAATGATTTCCTGCCACCTTTTCACTACATACCCCAAAATCTTGTGTTCCGAGATGCTAATGTTAGCATTTCTCTATCATGTATTGGTGGTGAGGACTGTTGTTCAACTTGTATGGGCAATTGTGTCCTTTTGTCTACACAATGTGCTTGTGCAAATAAAACTGGAGCTGAATTTGCATATACTGCTGAAGGACTACTGAAGGAAGATTTCTTGGAAGAGTGCATTGCCATCAGCCACAACCCTCAACAACATTACTTCTATTGCAAAGACTGCCCACTAGAAAGATCTAAGGATGATGGTTGTTTAGAACCATGTAAGGGACATTTAAAGAGGAAATTTATTAAAGAATGTTGGACCAAATGTGGCTGTGGAAAACAGTGTGGCAATCGGGTTGTTCAACGAGGAATAACTGGCAAATTGCAGGTATTTTTCACTCCAGAAGGAAAAGGTTGGGGTCTTCGTACCTTGGAGGACCTGCCAAAAGGTGCGTTTGTGTGTGAGTTTGTTGGAGAAATTTTAACCACTGAAGAGCTGAATGAGAGAAACATGAAATGCACTGGAAATGGGAGCTACACATACCCAATTGTACTGGATGCAGATTGGGATTCAAGGTTTGTGAAGGATGAAGATGCTCTATGCTTGGACGCGGCATCTTTTGGTAACGTTGCCCGGTTTATCAATCACAGATGTTCTGATGCAAACTTGGTTGAGATCCCAGTCGAAATTGAGGGGCCCGGTCACCATTACTATCATTGTGCCTTTTTCACTTCCAGAAAAATAGTAGCACAGGAGGAGCTCACTTGGGATTATGGCATTGACTTTGATGACAGTGATCATCCTGTTAAGCTTTTCCAGTGTAGATGTGGCAGTAAATTCTGCAGGAATATGAAGCGATCAAATAGATCCACTAGATCTGCTTCAGCTGCAAGTTCATAG 2445 0.4204 MAPNPKVVAAFRAMSALGITESQVKPVLKKLLKLYDKNWELIEEENYRALADAIFEAAEHPVPEQKKKSKNVHQEEMEDEEAQMHVDSAQPLKRSHLRVQDGQSSNPLTNSSPGSAASPLKKPKLEGDILPESSSRQRPQNTAVSSDINARSESRPIPPHDGTVDRGKQPLSPQVARRRRLISERERAALSAQSKEPTVEPGMRPLPNNKMPHSHAVIIPKDEPIDELPDYAVPVTMIPPEPSSMRNSPMMNGAARKRDGHITKASLQFRDETVRDEDIHPSSNEEATSNVEIASSTLGEVKISLRCSFAVGRPEYRMPSQDQILQMMEEKCLRSYKITDPNFSVPKLLKDICDCMLEFRNDSNDDSQKKSWTTSNVDVMKESDAHGILSSRGNEDPNMLSHTSNGSINVKSSAALVSPRSPFSVAEVSGLDDAVRASLKDKTTNILESNYSKEPENLMSPNSHSLAVVPQHNQLTDIRSIHDVNDLTKGEEIVQIPWVNDTTNDFLPPFHYIPQNLVFRDANVSISLSCIGGEDCCSTCMGNCVLLSTQCACANKTGAEFAYTAEGLLKEDFLEECIAISHNPQQHYFYCKDCPLERSKDDGCLEPCKGHLKRKFIKECWTKCGCGKQCGNRVVQRGITGKLQVFFTPEGKGWGLRTLEDLPKGAFVCEFVGEILTTEELNERNMKCTGNGSYTYPIVLDADWDSRFVKDEDALCLDAASFGNVARFINHRCSDANLVEIPVEIEGPGHHYYHCAFFTSRKIVAQEELTWDYGIDFDDSDHPVKLFQCRCGSKFCRNMKRSNRSTRSASAASS* 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1140 814 MobiDBLite consensus disorder prediction 133 152 - -
Lan4g1140 814 Pfam SET domain 653 774 IPR001214 GO:0005515
Lan4g1140 814 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 814 IPR025776 -
Lan4g1140 814 ProSiteProfiles SET domain profile. 641 774 IPR001214 GO:0005515
Lan4g1140 814 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 301 - -
Lan4g1140 814 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 374 810 - -
Lan4g1140 814 SMART preset_2 484 625 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lan4g1140 814 MobiDBLite consensus disorder prediction 61 211 - -
Lan4g1140 814 SMART set_7 641 780 IPR001214 GO:0005515
Lan4g1140 814 MobiDBLite consensus disorder prediction 97 117 - -
Lan4g1140 814 ProSiteProfiles Pre-SET domain profile. 532 638 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lan4g1140 814 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 374 810 - -
Lan4g1140 814 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 1 301 - -
Lan4g1140 814 Gene3D SET domain 474 800 IPR046341 -
Lan4g1140 814 Gene3D - 1 60 IPR043017 -
Lan4g1140 814 MobiDBLite consensus disorder prediction 61 94 - -
Lan4g1140 814 Pfam Ubiquitin-binding WIYLD domain 6 59 IPR018848 GO:0018024
Lan4g1140 814 Pfam Pre-SET motif 488 633 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lan4g1140 814 SUPERFAMILY SET domain 495 797 IPR046341 -
Lan4g1140 814 CDD SET_SETDB-like 508 774 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1140 Lan-Chr4 17926049 17932851 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1140 617 799 C2H2 Transcription Factor Family AT2G23740 40.212 4.33e-32 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lan4g1140 Pre-SET 1.4e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1140 - - gmx:100778335 1060.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g1140 4 17926049 17932851 Lan4g1140 4 17926049 17932851 ECH