Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1128 ATGAGGACGAGGACCACTAACTTTTGCCCTCCAAACAACCATGGAGGGTGGTGTGACCCTCCTCACCATCACTTCGATATGTCTATGCCTGCTTTCTTTCGCATTGCACGACAAGGCAATGAAGGCATTGTTCCAGTCCTTTATAAAAGGGTGGGATGCAAAAGAAGAGGGGGAGTAAGGTTCACGTTGAAGGGGCAATCAAATTTCAACATGGTGATGATAACCAACGTTGGTGGGAGTGGAGAAGTGAAAGGCGTGTGGATCAGAGGATCAAGAAGTGGAGCATGGTTACCATTGCACAGAAACTGGGGTGCTAACTGGCAAAGCAATGCAGATCTCAGAAACCAAAGGCTTTCATTCAAGATCACATTGGTTGATGGAAAGACACTCATCTTTCTCAATGTGGTTCCTTCTTCTTGGAGATTTGGACAGACTTTTGCATCCAGGAATCAGTTCTTTTAG 462 0.4567 MRTRTTNFCPPNNHGGWCDPPHHHFDMSMPAFFRIARQGNEGIVPVLYKRVGCKRRGGVRFTLKGQSNFNMVMITNVGGSGEVKGVWIRGSRSGAWLPLHRNWGANWQSNADLRNQRLSFKITLVDGKTLIFLNVVPSSWRFGQTFASRNQFF* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1128 153 Gene3D - 58 153 IPR036749 -
Lan4g1128 153 Gene3D - 1 54 IPR036908 -
Lan4g1128 153 PRINTS Expansin signature 1 11 IPR002963 GO:0009664
Lan4g1128 153 PRINTS Expansin signature 15 32 IPR002963 GO:0009664
Lan4g1128 153 PRINTS Expansin signature 57 69 IPR002963 GO:0009664
Lan4g1128 153 PRINTS Expansin signature 69 90 IPR002963 GO:0009664
Lan4g1128 153 PRINTS Expansin signature 105 126 IPR002963 GO:0009664
Lan4g1128 153 PRINTS Expansin signature 134 150 IPR002963 GO:0009664
Lan4g1128 153 Pfam Lytic transglycolase 4 48 IPR009009 -
Lan4g1128 153 Pfam Expansin C-terminal domain 59 137 IPR007117 -
Lan4g1128 153 PRINTS Expansin/Lol pI family signature 41 57 IPR007118 GO:0005576
Lan4g1128 153 PRINTS Expansin/Lol pI family signature 96 110 IPR007118 GO:0005576
Lan4g1128 153 PRINTS Expansin/Lol pI family signature 134 148 IPR007118 GO:0005576
Lan4g1128 153 SUPERFAMILY PHL pollen allergen 55 148 IPR036749 -
Lan4g1128 153 PANTHER EXPANSIN-A15 5 152 IPR002963 GO:0009664
Lan4g1128 153 SMART dpbb_1 1 48 IPR007112 -
Lan4g1128 153 PANTHER EXPANSIN-A12 5 152 - -
Lan4g1128 153 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 68 148 IPR007117 -
Lan4g1128 153 SUPERFAMILY Barwin-like endoglucanases 4 76 IPR036908 -
Lan4g1128 153 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 1 58 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1128 Lan-Chr4 17611552 17612385 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1128 5 153 Expansin Gene Family AT3G15370 72.483 1.75e-77 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1128 - - lang:109344665 324.324