Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1111 ATGGGTATGTTTGATCTCAATGTTGACATTATCCATATTGATGATACTGACTCAGCTTGTGCTAAAGAGTTGGTGCAACTTCAAAGTTTTCCATCCAAAATATCACATTCTAGGGCATCCAAATCCTCAGTTGTGATTAATCTTGCAGAGGAAAATTATTCCAACAATTATTCACCCTTCATTTTTGACATAATGAAGAAAGGAACAGAAGCCGTTGAAAGGAACAAGGAAGATGAAAACATAGCACATGAGAAAGAGTTAACTATGACCCTTTTCCCTGTGAATACAGATAGGGGAGGAAGAGTTTCTGATATGAAAAAGAGGAAAAATGAATGGTTGAACTTGTCATTTGCTGAGCATGATGGACAAAATGAAGTGAGAACCTTGCACCAGAAGCAATGTCAAATCAAGAAAGGAAGGAGAGGACCAAGGTCTCAGAGCTCACAGTTCCGGGGTGTTACCTTCTACCGCAGGACTGGTAGATGGGAGTCACATATATGGGATTGTGGGAAGCAGGTTTATTTGGGTGGATTTGACACTGCTCAAGCTGCAGCAAGAGCATATGATAAGGCTGCAATTAAATTTCGTGGAGATGATGCTGATATAAACTTTGATTTGAGTGATTATGAGGAGGATATGAAACAGATGAGAAGTTTGAGTAAGGAAGAGTTTGTTCTCCAACTTCGTCGACAAATAAATGGAATATCAAGAGCAACTTCAACATATAGACGTCTATTTGCTCTTCAAAAATATGGTGAAGGGAATGCACAAATGAGCCCATTTCTTAGCACAAGATTTTGTCACAAGCCACCCATCAAATGTGATGATGAACAAGTCTTGATCAGCCTCAAGCCATGTACTTATTATAATAGAGAGATAATTGCAACTTCTAGTAAAGAAGGAACTAGTCATAATCTTGATTTGAGCCTAGGAATTTCTCCATCTTATTCTAAGCAAATGAGGATTAATGATTCTGAGAGAGGCTTATGCTTTGGATATAAAGATCCTAAGATACCCCACTAA 1023 0.3832 MGMFDLNVDIIHIDDTDSACAKELVQLQSFPSKISHSRASKSSVVINLAEENYSNNYSPFIFDIMKKGTEAVERNKEDENIAHEKELTMTLFPVNTDRGGRVSDMKKRKNEWLNLSFAEHDGQNEVRTLHQKQCQIKKGRRGPRSQSSQFRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAQAAARAYDKAAIKFRGDDADINFDLSDYEEDMKQMRSLSKEEFVLQLRRQINGISRATSTYRRLFALQKYGEGNAQMSPFLSTRFCHKPPIKCDDEQVLISLKPCTYYNREIIATSSKEGTSHNLDLSLGISPSYSKQMRINDSERGLCFGYKDPKIPH* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1111 340 CDD AP2 148 207 IPR001471 GO:0003700|GO:0006355
Lan4g1111 340 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 319 - -
Lan4g1111 340 Gene3D AP2/ERF domain 148 207 IPR036955 GO:0003700|GO:0006355
Lan4g1111 340 ProSiteProfiles AP2/ERF domain profile. 149 205 IPR001471 GO:0003700|GO:0006355
Lan4g1111 340 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SMZ-RELATED 3 319 - -
Lan4g1111 340 SUPERFAMILY DNA-binding domain 148 206 IPR016177 GO:0003677
Lan4g1111 340 SMART rav1_2 149 211 IPR001471 GO:0003700|GO:0006355
Lan4g1111 340 Pfam AP2 domain 149 197 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1111 Lan-Chr4 17076841 17081935 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1111 3 265 AP2-EREBP Transcription Factor Family AT2G28550 48.352 3.60e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lan4g1111 AP2 3.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1111 K09284 - gmx:100776138 366.696