Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1100 ATGGCCGTTACCTTCTCAAATCTCCACACAGATTCAGGCCTCAAATCCCTTGATGATTTCCTATCTGGAAAAACCTACATTTCTGGAAATTGTAGGGACCAGTTCACAAAGGATGATATCAAAGTCTTTGCATCTGTCTTGGAGAAACCAAATGACACATCAGCCAATGCTGCTAATTGGTACAATGTTGTCTCTTCTCAACTTGCTCTAAGCTTCCCGGGCAATGCTCAAGGGGTAAGGTTCACTGTCAAAGCTGCTCCAGCTGAGGCTGCACCTGCAAAGCCGGATGCTTCTACTGCTGAAGATGATGATGATCTAGATCTCTTTGGCGATGAGACAGAGGAGGAGAAGAAGGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAGAAAGAGAGTGGCAAATCTTCTGTTCTGCTCGATGTTAAGCCTTGGGACGATGAGACAGACATGAAGAAGCTGGAAGAGACTGTTCGCAGCATCGAGTTGCCTGGCTTATTGTGGGGAGCATCTAAACTCGTCGCAGTTGGTTATGGGATCAAGAAGCTGCAAATTATGATGACCATTGTCGATGACCTTGTTTCTGTGGACACCCTTATTGAGGAACGTCTGACGGTTGAGCCAGCCAACGAGTATATCCAGAGCTGCGACATTGTTGCATTCAACAAAATTTAA 681 0.4626 MAVTFSNLHTDSGLKSLDDFLSGKTYISGNCRDQFTKDDIKVFASVLEKPNDTSANAANWYNVVSSQLALSFPGNAQGVRFTVKAAPAEAAPAKPDASTAEDDDDLDLFGDETEEEKKAAEEREAAKKPAKKKESGKSSVLLDVKPWDDETDMKKLEETVRSIELPGLLWGASKLVAVGYGIKKLQIMMTIVDDLVSVDTLIEERLTVEPANEYIQSCDIVAFNKI* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1100 226 Gene3D - 130 226 IPR014717 -
Lan4g1100 226 CDD EF1B 135 226 IPR014038 GO:0003746|GO:0006414
Lan4g1100 226 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 215 226 IPR001326 GO:0003746|GO:0005853|GO:0006414
Lan4g1100 226 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 1 226 - -
Lan4g1100 226 Pfam EF-1 guanine nucleotide exchange domain 139 226 IPR014038 GO:0003746|GO:0006414
Lan4g1100 226 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 102 110 IPR001326 GO:0003746|GO:0005853|GO:0006414
Lan4g1100 226 PANTHER TRANSLATION ELONGATION FACTOR EF1B/RIBOSOMAL PROTEIN S6-RELATED 1 226 - -
Lan4g1100 226 SUPERFAMILY eEF-1beta-like 134 226 IPR036219 -
Lan4g1100 226 MobiDBLite consensus disorder prediction 88 107 - -
Lan4g1100 226 MobiDBLite consensus disorder prediction 113 134 - -
Lan4g1100 226 SMART EF1_GNE_2 137 226 IPR014038 GO:0003746|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1100 Lan-Chr4 16637155 16639715 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1100 1 226 Eukaryotic Initiation Factors Gene Family AT5G12110 68.398 8.34e-96 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1100 K03232 - gmx:100306132 324.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g1100 4 16637155 16639715 Lan2g1227 2 23366283 23385032 PCT
Lan4g1100 4 16637155 16639715 Lan9g1410 9 21025797 21027931 PCT
Lan2g1227 2 23366283 23385032 Lan4g1100 4 16637155 16639715 PCT
Lan9g1410 9 21025797 21027931 Lan4g1100 4 16637155 16639715 PCT