Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1096 ATGGCTGGGATAGATGATAATGTGGCTCTAGCTGGCGATTTGGGTCATTCAATTCCGAGCCCGAGGACCTTTTTTTCTAGAATGCTAGGTGAAGACACTGTAACAAGATCAATCTCAGATCCTCCTGGAAGTGGTAGAATTGGGTTTCGGACTCATGACCAGGCTGAGTCAGGTAAAGGAGAGATAAAAGATAGCTCACAAGATGGTGATTCTGGTGACCAATTGACCGAGACGAGTTTTCTGAATGATCAAAAATCGAATTTGCGAGGAGGTCTTGTTGAAAGGATGGCTGCTAGAGCTGGGTTTAATGCTCCGAGGTTGAATACTGAATGCATAAGATCTACTGATCTTACACTTAATGCTCATATTCAATCTCCTTACTTGACCATTCCACCGGGTCTCAGTCCCACTACACTTTTGGATTCTCCAGTGTTCCTCGCAAATGCGCTGGCACAGCCATCTCCAACAACTGGAAAGTTTCCATTCATCTCAAATGGAAACATCCTGTACTCAGAATTATCATCCGATGATCCTGAAAAATCTAAAGATAACCTTGATGATTTGTATGCATCATCCTTTGCTTTCAAGCCTGCAATAGATTCAGGCTCATCTTTTTATTATGGCACTGCAAGGAATCTAAATCTAACTACAGTTCCTCAACAATCTGTTCCTGGTATTGAGACCTCTGTTCAGTCAGAAGATTCTTTCCAATCTCTAAGTGTTGATGCAGTCAATGATCAATCTAAAAATGATAGTGGCCTCCATTATCAGCCAGACTTTGTCGAGTCGCCTCCACAAAAAGATAATGGAGTCAAATCTTTCTCAGGTGATAAAAGGGCACGTTCCACACCACCTGAAGAGCAAGCAAATGAAGAGGGAGATCGAAGAGTGAATGGAGACTCAACAGTTGCTGGTGTTGGTGGTAAGCCAGCTGAAGATGGATATAACTGGAGAAAATATGGCCAAAAGCAAGTTAAGGGCAGCGAGTATCCACGGAGTTACTATAAGTGTACACATCCAAATTGTCTGGTTAGGAAGAAAGTGGAGCGATCTCATGAGGGCCACATAACAGAGATCATCTATAAGGGAGCACACAACCATCCCAAAACTCTAAATCGCCGGTCCGGCGGAGGGTCAGTCAACCCTCATACGGACGTGCAATTGGATAATCCTGAACATTTTGAACCACAAAATGGTGGTGATATGGGCTGGGCTAATGTACAAAAGGGAATTATAGTTGGGTCGGCTAATTGGAAGCATGATAACCCTGAAGTGACATCCTCAGCATCTGTTGGCCCTGAATACTGCAACCAGTCCACCGATTTGCAGACTCGGAATGGTACTCACATTGATTTAGGAGATGCAGTGGATGGCTCGTCTACTTTTTCTAACGAAGATGAAGATGACCGAGGCACTCATGGTAGTATCTCATTAGGTCATGATGGGGAAGAAGATGAATCAGAGTCTAAAAGAAGGAAACTGGAATCTTATGCAGCCGAGTTGAGTGGAGCTACAAGAGCTATTCGCGAGCCTAGAGTTGTTGTACAGACTACCAGCGAAGTAGATATCCTCGATGATGGGTATCGCTGGCGAAAGTACGGGCAAAAAGTTGTCAAAGGAAATCCCAATCCAAGGAGTTACTACAAGTGCACCAATGCTGGCTGCACGGTGAGGAAGCACGTTGAGAGAGCATCACATGACCTTAAATCTGTCATAACTACCTACGAGGGAAAGCACGATCACGATATTCCGGCTGCTCGCTCTAGCAGCCATATCAATGTTGCCGCGTCCAGCACTGTTCCTGGGCAAGGTCATGTTCATAGACCTGAACCATCTCAAGTTCACAATGGCATTGGAAGGCTCGACAGGCCTTCCCTCAGCTCATACCTACCTAGGAGCCTGCAGCTAGGACCCTCCCACAGCTTCTCCTTCGGTATGAACCAACCTATGCTCTCAAATCTGGCAATGCCAGGATTTGGATCCGGGCACGGAAAGCTTCCTAGCATGCATGTTCATCCATTATTGGCACAACAATGCCCGAACTCGGCTAATGAAATGGGTTTTATGTTACCAAAGGAAGAATCAAATGTGGAACCTATTCCTGAACGTGGGTCATCAATATATCAAGAAATTATGAATCGTATGGCTCTTGGACCTCATATGTAA 2166 0.4497 MAGIDDNVALAGDLGHSIPSPRTFFSRMLGEDTVTRSISDPPGSGRIGFRTHDQAESGKGEIKDSSQDGDSGDQLTETSFLNDQKSNLRGGLVERMAARAGFNAPRLNTECIRSTDLTLNAHIQSPYLTIPPGLSPTTLLDSPVFLANALAQPSPTTGKFPFISNGNILYSELSSDDPEKSKDNLDDLYASSFAFKPAIDSGSSFYYGTARNLNLTTVPQQSVPGIETSVQSEDSFQSLSVDAVNDQSKNDSGLHYQPDFVESPPQKDNGVKSFSGDKRARSTPPEEQANEEGDRRVNGDSTVAGVGGKPAEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCLVRKKVERSHEGHITEIIYKGAHNHPKTLNRRSGGGSVNPHTDVQLDNPEHFEPQNGGDMGWANVQKGIIVGSANWKHDNPEVTSSASVGPEYCNQSTDLQTRNGTHIDLGDAVDGSSTFSNEDEDDRGTHGSISLGHDGEEDESESKRRKLESYAAELSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHDHDIPAARSSSHINVAASSTVPGQGHVHRPEPSQVHNGIGRLDRPSLSSYLPRSLQLGPSHSFSFGMNQPMLSNLAMPGFGSGHGKLPSMHVHPLLAQQCPNSANEMGFMLPKEESNVEPIPERGSSIYQEIMNRMALGPHM* 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1096 721 MobiDBLite consensus disorder prediction 423 447 - -
Lan4g1096 721 Gene3D WRKY domain 304 370 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lan4g1096 721 MobiDBLite consensus disorder prediction 245 310 - -
Lan4g1096 721 MobiDBLite consensus disorder prediction 34 83 - -
Lan4g1096 721 Pfam WRKY DNA -binding domain 312 368 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan4g1096 721 Pfam WRKY DNA -binding domain 525 581 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan4g1096 721 Gene3D WRKY domain 511 577 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lan4g1096 721 ProSiteProfiles WRKY domain profile. 519 584 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan4g1096 721 MobiDBLite consensus disorder prediction 599 619 - -
Lan4g1096 721 ProSiteProfiles WRKY domain profile. 312 370 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan4g1096 721 SUPERFAMILY WRKY DNA-binding domain 310 368 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lan4g1096 721 MobiDBLite consensus disorder prediction 463 495 - -
Lan4g1096 721 SMART WRKY_cls 524 583 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan4g1096 721 SMART WRKY_cls 311 369 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan4g1096 721 MobiDBLite consensus disorder prediction 423 495 - -
Lan4g1096 721 SUPERFAMILY WRKY DNA-binding domain 516 584 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lan4g1096 721 PANTHER WRKY TRANSCRIPTION FACTOR SUSIBA2-LIKE ISOFORM X1 96 599 - -
Lan4g1096 721 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 96 599 IPR044810 GO:0003700
Lan4g1096 721 MobiDBLite consensus disorder prediction 272 298 - -
Lan4g1096 721 MobiDBLite consensus disorder prediction 52 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1096 Lan-Chr4 16481020 16485635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1096 1 715 WRKY Transcription Factor Family AT5G56270 47.028 1.08e-180 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lan4g1096 WRKY 9.8e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1096 K18835 - gmx:100127395 1054.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g1096 4 16481020 16485635 Lan2g0177 2 1489780 1494286 LSH
Lan4g1096 4 16481020 16485635 Lan16g0779 16 13675387 13680281 LSH