Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1089 ATGGCCATAAACGACAGGCCGTTTAAGAGGGCTAAGAAAACGGTTTCGACCGACCTTCACGATTTTTTCACCTTCCCGGCCGCGATTCACGACGGCGCCGCCGTCAATGAGCCGTTCCGGTGCAACGTTCACCGTTTCCTCAACAACCATGCGCGGCTCACTTTTCCGCCGTCGTTTTTTCCGTCGCTGATGACGTGGCAGATATTGTTCCGTGTTATTGGGCCCGATCTTTCGGTGGAGACGGTTGCACTTGATATTGTGGAAGAAGATGTGACTCGCTCTCGTGGCTCAGTTTATTGCGACCAGTGCCGAGTTGTTGGTTGGAGCGGGCATCCAGTGTGTAGAAAGAGATACCATTTCATAATTAGAGCTGATTCAAGTGATGCAATTGAACCTTATCAAAGACCTTGTTCAAGATGTACCAATCTTGTTCAATTATCAGAACCTAGGTGCAAATGGTGTAACTATGCAATTACAGTTGATGATCTTGAGGATTGGTTGTATCTTCAAATTGAAGATAATACCCATCTTTTACATGGTGTTGTTCACTCTAATGGTTATGGTCACTTGCTTACTCTTAATGGAAGAGAAGGTGGTTCTAAGCTTCTTTCGGGAACTCATATTATGGGTTTTTGGGATCGGCTCTGTGCTAAACTCGCTGTTAGGAAAGTTAGCGTGATGGACTTGTCGAAGAAATTCGGGCTTGAGTTTAGGTTGCTTCATGCTATCACTAATGGGTGTTCCTGGTATGGCAATTGGGGTTATGAATTTGGTACGGGAAGTTATGCTCTTACTCAAGACGCGTACCAGAATGCAGTGAATGCCCTCTCAAGCATAACCTTGTCATCATTTTTGTTTGAGGGAAGGGGACCCCGAGGCCGCCTACAGTCAGTGATCTCTCTTTACCAATCTTTGGCGGACGTGGAACTTCTAACGATTAAAGACCTCTTCTCTTTTTTGTTGAAGCTGATTAGTGAAGTCCGCAAGCGCCCGACCACAATCACTTCTAATGTCGTGTGTGCTTGGACAAATAATGATGTTCAAGATGTGCAACAAGCTTTGATTAAAGTGTTGCTTGCATCCGGTACCTATAATAAGACCAAATGGGTGAGTAGGCGTGCTCTCAAGGGTGCAGTATGTAGGAGGATTGCATCTCCGGAGCTTCTAGATTATAGTCTTAAACACTTGAGAGGGAAAATAGCGTCGAATGGAATGGTAGTTTGTTCGCAATGCAATCCTATTTCTAGTGTGGTGGAGTTCAGACTTGAACCATTGAGTTTTGTGGGAAATGGATTAGTTGCCATGCCCAGTTATCCATCAGTAGAGCAAATGATATCGGATCTGAGATTTTTGTTTGATCAAATTATTCACCCGAACAAAATGGAGAGCAAGGGGCTTCAGATAATGAAGAAGTTGATATCTAATTCAGCAAGGAAGCTCTTAGACTGTAAGCAGTTTATGAAGGATTACAAACCCGGAAAATATGCAGAAGAGCTGCCATCTGCTATTAGGCTGTGGTGTCATGTTGAGCTTTCTGATCAGCCTAAAGACGATCCATCCCCACCTCCAGAATTGATTGTCTTGCCTCTGAATGCTACTGTTGCAACCCTTAAAAGCAAAGCCACTAATGTTTTTCAAGAAGTATATGTGATGTACAAGAGGTTTCAAGCTGACAAACTCCTTGGATGTGGGTCGACCAATGATTCATTCACAGTGAAGTTCCTGGTTGGAACAAGTGGGTCCATTCGCATTCAAGGCAAATGCGCCACCAAACATGGGCTGAGCCGATTCCGAATGGAAAGAGGAACAGAGGCCTGGAAAGTTGATTGCCAATGTGGGGCGAAAGATGATGATGGAGAAAGGATGTTAGCATGTGATACCTGCGGTGTTTGGCAGCATACCAGATGTGCTGGGATTGATAACTCTAATGACATTCCTTCAAAGTTTATGTGTATGAAATGTATCTCCTCACACCAGAAGGTATCCGGAAAACCGCGGAACTCTGATGATGATAGTAACAACAACAATGCTTGTAAATCCAACACAACCTGCAGAGGTGAAGTGGTGGGTACAGATAATCCAATAGTTGCTTGCAACATGACTGTAAATTTTGATGTACGTTGA 2124 0.4416 MAINDRPFKRAKKTVSTDLHDFFTFPAAIHDGAAVNEPFRCNVHRFLNNHARLTFPPSFFPSLMTWQILFRVIGPDLSVETVALDIVEEDVTRSRGSVYCDQCRVVGWSGHPVCRKRYHFIIRADSSDAIEPYQRPCSRCTNLVQLSEPRCKWCNYAITVDDLEDWLYLQIEDNTHLLHGVVHSNGYGHLLTLNGREGGSKLLSGTHIMGFWDRLCAKLAVRKVSVMDLSKKFGLEFRLLHAITNGCSWYGNWGYEFGTGSYALTQDAYQNAVNALSSITLSSFLFEGRGPRGRLQSVISLYQSLADVELLTIKDLFSFLLKLISEVRKRPTTITSNVVCAWTNNDVQDVQQALIKVLLASGTYNKTKWVSRRALKGAVCRRIASPELLDYSLKHLRGKIASNGMVVCSQCNPISSVVEFRLEPLSFVGNGLVAMPSYPSVEQMISDLRFLFDQIIHPNKMESKGLQIMKKLISNSARKLLDCKQFMKDYKPGKYAEELPSAIRLWCHVELSDQPKDDPSPPPELIVLPLNATVATLKSKATNVFQEVYVMYKRFQADKLLGCGSTNDSFTVKFLVGTSGSIRIQGKCATKHGLSRFRMERGTEAWKVDCQCGAKDDDGERMLACDTCGVWQHTRCAGIDNSNDIPSKFMCMKCISSHQKVSGKPRNSDDDSNNNNACKSNTTCRGEVVGTDNPIVACNMTVNFDVR* 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1089 707 PANTHER PHD FINGER PLANT-LIKE PROTEIN 1 671 - -
Lan4g1089 707 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 671 - -
Lan4g1089 707 SUPERFAMILY FYVE/PHD zinc finger 599 659 IPR011011 -
Lan4g1089 707 SMART PHD_3 609 655 IPR001965 -
Lan4g1089 707 Pfam PHD-finger 610 656 IPR019787 -
Lan4g1089 707 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 595 663 IPR013083 -
Lan4g1089 707 CDD PHD_MMD1_like 609 654 - -
Lan4g1089 707 ProSitePatterns Zinc finger PHD-type signature. 610 654 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1089 Lan-Chr4 16291244 16294740 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1089 82 654 PHD Transcription Factor Family AT5G22260 29.479 1.30e-82 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lan4g1089 PHD 3.4e-09 CL0390