Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1071 ATGGCTTTGAGGTTTATAGCGGTTTCGGCAATTTCAACAGTACTAAGCTTTGTCGGTCTGCAGTTTTGCTCAGACTTCTCGTTACATACACTTAAATCAGATGGACTAATTCGCTGGAATTTAGTGCAATTGGACAGTGCCAACCATGAGATCGAGTTACCTTTGGGTTTGTTCACTACCATAGGGCTACTGGTGAATTGCATGATCAATGTATTTATCCTTCTCAATCTGTGTCTTAAGGCTATGTTCTTCACAGAGTTGTATTCTTCTGAAAGTCATAAACTGATTGAGCGTCTCATTAATTATGTCGTTTATAAGGGGACATTCCTACCACTGATTGTGCCACCAACTATATATCATGCTGGTCTTTGGTCAACTTGGTTGGCTGTGCTTTGTTCTTTAAAGATGTTTCAAGCATTAGCCAGGGATCGTTTGGAGCGGCTGAATGCATCTCCATCTGCTACACCCTGGACATATTTCCGTGTATATTCAGCATTGTTATTCGTTTTCTTGGTTGATGTTCTCTGGATAAGGCTATGTCTGACGATATATAAAACACATGGGTCCTCTTTGTTTCTGTTACTATTCTTTGAGCCTTTCAGTATTGCTTTTGAGACCCTACAGGCTATTTTGGTACATGGATTTCAGTTATTTGATATATGGTGCAACAGCAGTGATTGTGGACGGTCTAAACTGTTTGACTCATTAACAGCAGGTTCACTATTGGAGTGGAAGGGGCTTCTAATTCGGAACTTGGGATTTTTCCTAGACATGGCAACATTTTTTATGGCACTAGGCCATTACCTGTATATATGGCGGCTTCATGGCATGACATTCCATCTTATAGATGCAGTTCTATTTCTAAACATACGTGCATTACTTGGTGCAATTGTAAATCGCATAAAAGGCTTTATTAGGCTACGGATAGCTCTAGGAGCTCTTCATGCAGCTCTTATTGATGCAACAACTGAGGAGCTAAGAGCATATGATGATGAATGTGCTATTTGTAGAGAACCCATGGCTAAGGCTAAAAGGCTAAACTGCAATCACCTCTTCCATCTTGCATGTTTGAGATCTTGGTTGGATCAAGGCCTGACTGAGACGTATACTTGTCCTACATGCCGAAAGCCTCTTTTTGCAGGCCAGCCTGAAAATGAAGCAAACTCTACTACAGAGGAGATATCTAGCGATGAGCAACTTGCACGCCAAATAAGTGCAGGACTTGATCGGGCAAACTCTGGTAGACAAAACAGTCCTGCAGGATTGTATCCCAATCAGACACCAAATACTGTGGAAGATGTTCCTTGGAGGGGTGCAGGACTGGATGCAGGTTGGTTGAATTCATGGCCAAATGAAGGCGTTGATGGAGCTGGTCCATCTACTGCAATCAGAACAGTTGGACTAGGAAGAGTTGAAACGATGATGAGGCATCTTGCATCTGTTGGAGAAACCTATGCTCAGACTGCCTTTGAAGATGCTGCTTGGAGCCTTTGGCCTATTAATCCCTCTCAGGCTTCGGCAAGTGGTTCAACCATTCCTTCCGCTGGTGGACGATTGCCAGGAGGAAATGGCAGTTTACACATAAGGACTGCTTCACAATCTGCAAATGATGATGTGACGAATATACTTGCTATGGCTGAGACTGTTCGGGAGGTTCTACCTCATATTCCAGATGACTTAATATTCCAGGACTTGCAGAGGACATTTTCTGTCTCAGTTACTGTGAATAATCTTCTCCAAATGTGA 1746 0.4267 MALRFIAVSAISTVLSFVGLQFCSDFSLHTLKSDGLIRWNLVQLDSANHEIELPLGLFTTIGLLVNCMINVFILLNLCLKAMFFTELYSSESHKLIERLINYVVYKGTFLPLIVPPTIYHAGLWSTWLAVLCSLKMFQALARDRLERLNASPSATPWTYFRVYSALLFVFLVDVLWIRLCLTIYKTHGSSLFLLLFFEPFSIAFETLQAILVHGFQLFDIWCNSSDCGRSKLFDSLTAGSLLEWKGLLIRNLGFFLDMATFFMALGHYLYIWRLHGMTFHLIDAVLFLNIRALLGAIVNRIKGFIRLRIALGALHAALIDATTEELRAYDDECAICREPMAKAKRLNCNHLFHLACLRSWLDQGLTETYTCPTCRKPLFAGQPENEANSTTEEISSDEQLARQISAGLDRANSGRQNSPAGLYPNQTPNTVEDVPWRGAGLDAGWLNSWPNEGVDGAGPSTAIRTVGLGRVETMMRHLASVGETYAQTAFEDAAWSLWPINPSQASASGSTIPSAGGRLPGGNGSLHIRTASQSANDDVTNILAMAETVREVLPHIPDDLIFQDLQRTFSVSVTVNNLLQM* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1071 581 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 5 581 - -
Lan4g1071 581 PANTHER E3 UBIQUITIN PROTEIN LIGASE RIN3 5 581 - -
Lan4g1071 581 Pfam Ring finger domain 331 375 IPR001841 -
Lan4g1071 581 ProSiteProfiles Zinc finger RING-type profile. 333 375 IPR001841 -
Lan4g1071 581 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 307 384 IPR013083 -
Lan4g1071 581 Pfam CUE domain 545 581 IPR003892 GO:0043130
Lan4g1071 581 Gene3D - 540 580 - -
Lan4g1071 581 ProSiteProfiles CUE domain profile. 541 581 IPR003892 GO:0043130
Lan4g1071 581 SUPERFAMILY RING/U-box 320 381 - -
Lan4g1071 581 SMART ring_2 333 374 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1071 Lan-Chr4 15823895 15832855 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1071 64 385 C3H Transcription Factor Family AT3G16090 27.434 2.94e-26 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1071 K10636 - gmx:100819656 993.801