Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1069 ATGTCCCTTCCTCTCTCCATTTTCATCCTCTTGTTCCTCTTTGCACCATTACTCCTAGCTCAAACTCCATCACCTACCACTTCTTCTTCTTCTTCCTACAATGATTGCAAATCCACATTATATCCAAAACTATGCCGTTCCATTCTCTCAGCAATCCGTTCCTCACCTTCAGATCCATATGGCTATGGCAAATTCTCCATTAAACAAAGCCTCAAACAAGCAAAAAAGCTATCAAAAGTGTTTGATGACTTCATCAACCACCACAGTAATTCCTCATCCTCATCGTCAACACTCAACCATGCTGAGGTTGGTGCACTAGGTGACTGCAAAGATCTCAACCAGCTCAATGTGGGTTACTTAGAATCCATATCTGAGGAACTCAAAGATGCTGATTCCTCAGATACTGAGCTGGTTGAGAAAATTGAGAGTTACCTAAGTGCTGTGGCAACTAACCATTACACTTGCTTTGATGGGTTGGTTGTGACTAAGAGTAGCATTGTTAATGCACTTGCTGTGCCACTTAAGGATGTGACACAGTTGTATAGTGTGTCACTTGGGTTGGTTAGTGAAGCTCTTAATAGAAACCTAAAGAAACATAAAACAAGGAAACATGGCCTTCCAACCAAAACCTTCAAAGTTAGGCAACCACTTGAAAAGCTCATTAAGCTTCTCCACACCAAGTATAATTGCAATAAATCATCAAATTGCACTAGAGCTGAAAGAATTCTTGAAGAAAGTAAAAACCAAGGAATTCTATTGAACCAATTTGTGATTGTGAGCCCTTATGAAACAGACAACTATACTTCTATAGGACAAGCTATTGATGTTGCACCAAACAACACAAAGCCAGAAGATGGATATTTCCTTATCTATGTTAGAGAAGGGTACTATGAGGAATATGTAATTGTTCCTAAACATAAGAAGAATATTCTACTTATTGGAGATGGTATTAACAAGACTGTCATCACAGGGAACCATAGTGTTATTGATGGTTGGACAACTTTCAATTCTGCCACCTTTGCTGTATCTGGAGAAAGATTTATAGCAGTAGATGTTACATTCAGCAACACAGCAGGTCCTGAAAAACACCAAGCAGTAGCATTAAGAAACAATGCTGATCTCTCTGCATTCTATCATTGCAGCTTTGAAGGATATCAAGACACACTCTATGCTCATTCTCTAAGACAATTCTATAGAGAATGTGATATTTATGGCACAGTAGATTTCATTTTTGGTAACTCTGCAGTAGTATTCCAGAACTGTAACATCTATGCTAGAAAACCTATGCCAAACCAAAAGAATGCTGTGACAGCACAAGGAAGAACTGATCCTAATCAAAATACTGGCATTTCAATCCAAAACTGTAAGATTGATGCTGCACCTGACTTGGCCGCAGACTTGAATTCGACCTCGAATTACTTAGGCCGGCCGTGGAAGGAGTACTCAAGAACAGTTTATCTTCAGTCATATATTGGAGATCTAATTCATCCAACTGGGTGGTTAGAATGGAATGGAACAGTAGGATTAGACACACTATTTTATGGTGAGTTCAATAATTATGGACCTGGTGCTAAAACTAACAATAGGGTGCAATGGCCTGGTTTTAGTTTGCTGAATGATACACAAGCTTGTAACTTTACTGTGCTTAATTTTACATTGGGGAATACATGGCTTCCTGATACAGATATTCCCTACTCTGGAGGGTTACTAAATTAG 1716 0.3899 MSLPLSIFILLFLFAPLLLAQTPSPTTSSSSSYNDCKSTLYPKLCRSILSAIRSSPSDPYGYGKFSIKQSLKQAKKLSKVFDDFINHHSNSSSSSSTLNHAEVGALGDCKDLNQLNVGYLESISEELKDADSSDTELVEKIESYLSAVATNHYTCFDGLVVTKSSIVNALAVPLKDVTQLYSVSLGLVSEALNRNLKKHKTRKHGLPTKTFKVRQPLEKLIKLLHTKYNCNKSSNCTRAERILEESKNQGILLNQFVIVSPYETDNYTSIGQAIDVAPNNTKPEDGYFLIYVREGYYEEYVIVPKHKKNILLIGDGINKTVITGNHSVIDGWTTFNSATFAVSGERFIAVDVTFSNTAGPEKHQAVALRNNADLSAFYHCSFEGYQDTLYAHSLRQFYRECDIYGTVDFIFGNSAVVFQNCNIYARKPMPNQKNAVTAQGRTDPNQNTGISIQNCKIDAAPDLAADLNSTSNYLGRPWKEYSRTVYLQSYIGDLIHPTGWLEWNGTVGLDTLFYGEFNNYGPGAKTNNRVQWPGFSLLNDTQACNFTVLNFTLGNTWLPDTDIPYSGGLLN* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1069 571 Pfam Pectinesterase 257 554 IPR000070 GO:0030599|GO:0042545
Lan4g1069 571 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 36 189 IPR035513 -
Lan4g1069 571 SUPERFAMILY Pectin lyase-like 255 568 IPR011050 -
Lan4g1069 571 CDD PMEI-like_3 36 190 - -
Lan4g1069 571 PANTHER PECTINESTERASE 7 569 - -
Lan4g1069 571 ProSitePatterns Pectinesterase signature 2. 403 412 IPR033131 -
Lan4g1069 571 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 191 IPR035513 -
Lan4g1069 571 Gene3D - 255 571 IPR012334 -
Lan4g1069 571 SMART PMEI_2 27 187 IPR006501 GO:0004857
Lan4g1069 571 Pfam Plant invertase/pectin methylesterase inhibitor 36 186 IPR006501 GO:0004857
Lan4g1069 571 PANTHER PECTINESTERASE 7 569 - -
Lan4g1069 571 TIGRFAM PME_inhib: pectinesterase inhibitor domain 4 188 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1069 Lan-Chr4 15814316 15819864 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1069 36 571 Carbohydrate Esterase AT3G10720 62.222 0.0 715
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1069 K01051 - gmx:100816503 914.064