Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1063 ATGAAGTTCTGTAAGAAATACCAGGAGTACATGCAAAGCCAGAAGAAGAAGCTTCCTGTGGTTGGCTTCAAAAAGCTCAAAAAGATCATGAAGAAATGCAGAAGAGATTATCAACCCAAAGAAGGCCTTAATGGATCCCTTCCCATCAAAACATGCCCTGATCATTGTCCAGTGTGTGATGGGACCTTTTTCCCTTCCCTTATGAATGAAATGTCAGAGGTAGTTGGCTGCTTTAACCAGCAAGCACGGAAATTGCTGGAACTACATCTTGCTTCTGGTTTCAGAAAGTATGTTTTCTGGTTCAAAGACAAATTAAAAGGGAACCATAATGCTCTAATTCATGAAGGCAAAGATCTGGTTACTTATGCTCTCATAAATTCCATTGCAATTAGAAAAATACTAAAGAAATATGACAAGATTCATTATTCGAAGCAAGGGCAATTATTTAAGTCAAAGGTGCAGAGTATGCACATGGAAATTCTTCAAAGTCCATGGCTCTGTGAGCTTATGGCTTTCCATATTAATTTAAGGGAAACAAAGGTGAAGTCAAGTGAAGCACCTACTTTTTTTGATGGCTGCTCTCTCACATTTAAGGATGGAAAACCATCACTTACTTGTGACTTCTTTGATTCCATCAAAGTTGATATTGACTTGACTTGTTCTATATGCTTGGATACAGTGTTTGATCCAGTTTCTCTGACTTGTGGCCATATATTCTGTTATATTTGTGCTTGCTCAGCTGCATCAGTAACCATTGTGGATGGACTTAAGACAGCAAATCCTAAAGAGAAATGTCCTCTATGCCGAGAGGGAAGAGTTTATGAAGATGCGGTTCACTTAGAAGAACTAAATATTCTGTTAGGTCGAAGCTGTCAGGAATACTGGGAAGAAAGACGCCAGACAGAGAGGGTAGAAAGGGTTAAGCAAATAAAGGAACACTGGGAATCACAGTGTAAGGCATTTGTGGGTTTCTGA 975 0.3918 MKFCKKYQEYMQSQKKKLPVVGFKKLKKIMKKCRRDYQPKEGLNGSLPIKTCPDHCPVCDGTFFPSLMNEMSEVVGCFNQQARKLLELHLASGFRKYVFWFKDKLKGNHNALIHEGKDLVTYALINSIAIRKILKKYDKIHYSKQGQLFKSKVQSMHMEILQSPWLCELMAFHINLRETKVKSSEAPTFFDGCSLTFKDGKPSLTCDFFDSIKVDIDLTCSICLDTVFDPVSLTCGHIFCYICACSAASVTIVDGLKTANPKEKCPLCREGRVYEDAVHLEELNILLGRSCQEYWEERRQTERVERVKQIKEHWESQCKAFVGF* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1063 324 Pfam Zinc finger, C3HC4 type (RING finger) 217 270 - -
Lan4g1063 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 209 322 IPR013083 -
Lan4g1063 324 CDD SPX_BAH1-like 2 147 - -
Lan4g1063 324 ProSiteProfiles Zinc finger RING-type profile. 220 269 IPR001841 -
Lan4g1063 324 SMART ring_2 220 268 IPR001841 -
Lan4g1063 324 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 323 - -
Lan4g1063 324 SUPERFAMILY RING/U-box 213 272 - -
Lan4g1063 324 ProSiteProfiles SPX domain profile. 1 151 IPR004331 -
Lan4g1063 324 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 323 IPR033326 -
Lan4g1063 324 ProSitePatterns Zinc finger RING-type signature. 235 244 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1063 Lan-Chr4 15521421 15524843 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1063 217 269 C3H Transcription Factor Family AT4G28270 41.379 1.27e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1063 K16275 - gmx:100797432 567.385