Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1062 ATGTCTTTCTCAACTACAACATGGGTCACATTCCTCTCAGGGGAAACGTTTACCTCAACTCTACCTCAATGGTTGAGATTCATTTTCCTCTCACCTTGTCCCCAAAGAGTTTTGTTATCTACCTTCAATGTTCTACTCCTACTTACCCTCTTTGTGATTTCAATTATAAAGCTTTGTTCTAAGTTCAAATCCAAATCCAGTGTTGGCAAAACCAATGAGCTCAACCATATCAGAAACAATGACAAATCTTTTGTCAGAACAAGTGCATGGTTTAAGCTAACACTAGCTGCAACTGTTGTTTTAACCATACTTTACATAGTTGCTTGTGTTATAGTGTTTACTAGTTCTAGTTCAAGTTCAACCAAGGTTGCATGGAACCAAATTGATGGGTTATTTTGGTTAGTCCAGGTTATAACACAAGCACTTATTGCAGTTTTGATCATCCATGAGAAAACATTTGAAGCTGTTACTCACCCTTTATGGCTTAGAATTTATTGGATTGCATATTTTATCATCATTTCTTTGTTCACAGCTTCTGGGGTTATGAGATTGGTATCTCTTGATGAAGCTGAAAACAAAGACTTGTTTATCATTAAGGTGGATGACATTGTATCTTTCATTTCTCTCCCTGTGTCACTGTTTCTTCTTATTGTTGCTGTTAAAGGAACCACTGGGATTAGTACTATGTCTAGTGAAGTAACAGAGCCACTTATTAATGAGGAAATTAAGTTATATGGTGATAATTTAAGCACAAGTGAGGTTACTGCTTTTGCTTCAGCTTCTTTTGTATCAAAGGCCTTTTGGATTTGGATAAATCCTTTGTTGAGTAAAGGGCATAAGTCACCTTTGAAAATTGATGAGGTTCCAACCCTTTCACCAGTGCATAGAGCTGAGAGAATGTCATTACTATTTGAATCGAAATGGCCTAAATCGACTGAGGGATCGAAGCATCCGGTTCAAATCACATTGCTTAGATGCTTCTGGAAGGATTTAACAGTCACTGCTATCCTTGCTATCATTAGGTTATGTGTCATGTTTGTAGGACCAGTGCTCATACAAAATTTTGTTGATGTCACCTCAGGGAAGGGAAGTTCCATATATGAAGGATACTTCCTTGTGTTGATTCTTTTCATATCTAAATTCATCGAAGTCTTGACGACTCATCATTTCAACTTCAGTGCTCAGAAGCTTGGAATGCTTATCCGATGCACACTCGTTACTTCTTTGTATAAGAAAGGGTTAAGGCTTTCATGCTCAGGTAGGCAGGATCACGGTGTAGGGACTATTGTGAATTACATGGCTGTTGATACTCAACAACTCTCGGATATGATGCTGCAGTTACACGCCGTGTGGATGATGCCAATTCAACTTTGTATCGGCTTATTTCTGCTTTACAATTCTCTAGGTGCTTCAGCAGTCACAGCATTGGTTGGACTTATTGGTGTTCTTATTTTTGTTGTGATTGGTACCAAAAGAAACAACACTTTCCAATTCAAAGTGATGATGAACCGTGACAAAAGAATGAAAGCTATGAATGAGATGCTTAATTACATGCGCGTCATCAAGTTCCAAGCGTGGGAAGAGCATTTCAATGAGAATATTATGCGTCACCGTGAGGCAGAATTTGAGTCGCTTTCCAAGTTCATGTTCTCCATTTGTGGCAATATGGTTATGATGTGGAGCACACCATTAGTGATATCAACTATCACCTTTGGCACTGCGATTTTGCTGGGAATTAAACTGGATGCAGCCACTGTTTTCACCACAACAACCGTGTTTAAGATCTTGCAGGAGCCTATTAGGGCATTCCCACAGTCTATGATATCGCTTTCACAAGCAATGGTATCATTGGGGAGGTTAGATAAGTACATGCTGAGCAAGGAATTGTTGAATGATTCGGTCGAGAGAGAGGAAGGGTATTTTGAACACACTGCTGTGGAGGTCAAGGATGGAACATTCAGCTGGGAGGACGATACCTTGCAACGGGACTTGAAAAATATCGATTTGGTGATCAATAAGGGGGAGCTTGCAGCAATTGTTGGGACTGTTGGGTCAGGAAAGTCATCTCTCCTTGCATCAATTCTTGGTGAGATGCGCAAAATCTCTGGAAAGGTTCAGGTTTTCGGGAGTACTGCTTATGTTGCACAAACATCGTGGATTCAAAATGGAACAATTGAAGAAAACATTCTCTTTGGTTTACCAATGGACAGACATAAGTACAATGAAGCTGTCAGGGTTTGTTGCTTGGAGAAAGATTTGGAAATCATGGAGTATGGTGATCAGACAGAGATCGGAGAGCGTGGCATCAATCTGAGCGGAGGCCAGAAGCAGCGTATACAACTTGCCAGGGCTGTATATCAGGACTGTGATATATATCTTCTTGATGATGTCTTCAGTGCTGTTGATGCTCATACTGGCTCTGAAATATTTAAGGAATGTGTGAGGGGAGCTCTAAAAGGCAAAACAGTTGTTCTTGTAACACACCAAGTAGATTTCCTACACAATGTGGATCTGATATTAGTGATGAAGGATGGAATGATAGTTCAATCAGGGAAGTACAATGATATACTAGAGTCTGGAGTGGATTTTAAAGCTCTTGTATCAGCACACGATACTTCTATGGAACTAGTAGAGCAAAGTGCGGTCGTTCTTGGTGAAAATTCGAACAAACCAACGAAATCTCTTGTGGCAGCTCCAAATCAGAATGGAACCAATGGTGAGAGCAGTTCTATTGAGCACCCGAAGTCTGCCAAGGGAAGTTCTAAACTCATCAAAGAAGAGGAGAGGGAAACGGGCAAAGTGAGCTTACGTATGTATAAACTCTACTGCACTGAGGCTTTCGGGTGGTGGGGTATTACAGGAGTATTTGTTCTCTCTTTGTTATGGCAAGCATCTATGATGGCAAGTGATTATTGGCTGGCATATGAAACCTCCGAAGAGCGTGCTCAAGTGTTTAACCCTTATATGTTTATTTCTATCTATGCAATCATTGCTGCTATTTCGGTTATTATTGTAGTGGCTAGATCATATTCCTTCACAATCATTGGACTAAAGACAGCTCAAATTTTCTTCACACAAATTCTTCACAGCATCTTGCATGCACCCATGTCTTTCTTTGACACTACGCCATCCGGAAGAATTTTAAGTAGGGCATCCACTGATCAGACCAATGTTGATATCCTACTCCCGTTGTTCTTGGGTATTGTTATTTCCATGTACATAACGGTGCTCGGCATCCTCTTCGTCACTTGTCAGAATTCTTGGCCAACAGCATTCTTGTTAATTCCTCTTGTTTGGTTGAATCTATGGTACCGGAGTTACTTTCTTTCTTCATCTCGTGAATTAACTCGCCTGGATTCAATTACCAAAGCACCTGTTATTCATCACTTCTCTGAAAGCATTTCGGGGGTTATGACAATCCGTGCATTCAGAAAGCAGAAGAATTTTTGTGAAGAGAACATTAAGCGGGTGAATTCTAATTTGCGAATGGATTTCCACAATTATAGTTCCAACGAGTGGTTAGGATTCCGCTTAGAATTGCTTGGAAGCTTAGTCTTTTGCATTTCTACAATGTTTATGATCGTCTTACCCAGCAGTATCATAAAGCCAGAAAATGTTGGTTTATCTCTTTCTTATGGGTTGTCCTTGAATGCTGTCCTGTTTTGGGCTGTATTCATGAGCTGTTTCATTGAAAACAAAATGGTTTCTGTCGAGAGGATAAAGCAGTTTACGAATATTCCGTCTGAACCATCATGGAATATTAAGGATCGTTTGCCTCCTCCGAATTGGCCCAGTCAAGGCAATGTAGATATCAAAGACTTGCAGGTCAGATACCGTCCAAACACTCCTCTAGTTCTTAAAGGCATCACTCTAAGCATCAGTGGAGGAGAAAAGATTGGCGTTGTTGGTCGAACTGGGAGTGGAAAATCAACTCTGATTCAAGTTTTGTTTAGGCTTGTGGAACCCTCAGGAGGGAAAATCATCATTGATGGTATTGACATAACTGTCTTGGGGCTTCATGATCTTAGATCAAGGTTCGGTATCATTCCTCAGGAGCCCATCCTTTTCGAAGGAACCATCAGAAGCAACATTGATCCGATTGGACAGTATACAGACGATGAAATATGGAAGAGCTTGGATCGATGTCAACTAAAAGAAGTCGTGGCTTCTAAGCCTGAAAAACTCGACTCTCTAGTGTTGGATAATGGAGAGAACTGGAGTGTGGGGCAGAGACAGTTGCTTTGTCTCGGACGGGTTATGCTTAAGCGAAGCCGGCTCTTGTTTATGGATGAAGCAACTGCTTCTGTTGATTCTCAAACTGATGGTGTAATTCAGAGGATCATTAGAGAAGACTTTGCAGCATGTACTATCATCAGCATTGCTCACAGAATACCCACAGTTATGGACTGTGATAGAGTATTAGTTGTGGATGCAGGGATAGCCAAAGAATTTGATAAGCCCTCTATCTTGCTTCAGAGGCCATCTCTTTTTGGGGCATTAGTTCAAGAATATGCCAACAGATCAAGTGGATTATAA 4536 0.4072 MSFSTTTWVTFLSGETFTSTLPQWLRFIFLSPCPQRVLLSTFNVLLLLTLFVISIIKLCSKFKSKSSVGKTNELNHIRNNDKSFVRTSAWFKLTLAATVVLTILYIVACVIVFTSSSSSSTKVAWNQIDGLFWLVQVITQALIAVLIIHEKTFEAVTHPLWLRIYWIAYFIIISLFTASGVMRLVSLDEAENKDLFIIKVDDIVSFISLPVSLFLLIVAVKGTTGISTMSSEVTEPLINEEIKLYGDNLSTSEVTAFASASFVSKAFWIWINPLLSKGHKSPLKIDEVPTLSPVHRAERMSLLFESKWPKSTEGSKHPVQITLLRCFWKDLTVTAILAIIRLCVMFVGPVLIQNFVDVTSGKGSSIYEGYFLVLILFISKFIEVLTTHHFNFSAQKLGMLIRCTLVTSLYKKGLRLSCSGRQDHGVGTIVNYMAVDTQQLSDMMLQLHAVWMMPIQLCIGLFLLYNSLGASAVTALVGLIGVLIFVVIGTKRNNTFQFKVMMNRDKRMKAMNEMLNYMRVIKFQAWEEHFNENIMRHREAEFESLSKFMFSICGNMVMMWSTPLVISTITFGTAILLGIKLDAATVFTTTTVFKILQEPIRAFPQSMISLSQAMVSLGRLDKYMLSKELLNDSVEREEGYFEHTAVEVKDGTFSWEDDTLQRDLKNIDLVINKGELAAIVGTVGSGKSSLLASILGEMRKISGKVQVFGSTAYVAQTSWIQNGTIEENILFGLPMDRHKYNEAVRVCCLEKDLEIMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSEIFKECVRGALKGKTVVLVTHQVDFLHNVDLILVMKDGMIVQSGKYNDILESGVDFKALVSAHDTSMELVEQSAVVLGENSNKPTKSLVAAPNQNGTNGESSSIEHPKSAKGSSKLIKEEERETGKVSLRMYKLYCTEAFGWWGITGVFVLSLLWQASMMASDYWLAYETSEERAQVFNPYMFISIYAIIAAISVIIVVARSYSFTIIGLKTAQIFFTQILHSILHAPMSFFDTTPSGRILSRASTDQTNVDILLPLFLGIVISMYITVLGILFVTCQNSWPTAFLLIPLVWLNLWYRSYFLSSSRELTRLDSITKAPVIHHFSESISGVMTIRAFRKQKNFCEENIKRVNSNLRMDFHNYSSNEWLGFRLELLGSLVFCISTMFMIVLPSSIIKPENVGLSLSYGLSLNAVLFWAVFMSCFIENKMVSVERIKQFTNIPSEPSWNIKDRLPPPNWPSQGNVDIKDLQVRYRPNTPLVLKGITLSISGGEKIGVVGRTGSGKSTLIQVLFRLVEPSGGKIIIDGIDITVLGLHDLRSRFGIIPQEPILFEGTIRSNIDPIGQYTDDEIWKSLDRCQLKEVVASKPEKLDSLVLDNGENWSVGQRQLLCLGRVMLKRSRLLFMDEATASVDSQTDGVIQRIIREDFAACTIISIAHRIPTVMDCDRVLVVDAGIAKEFDKPSILLQRPSLFGALVQEYANRSSGL* 1512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1062 1511 CDD ABC_6TM_ABCC_D1 333 620 IPR044746 GO:0140359
Lan4g1062 1511 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1261 1502 IPR027417 -
Lan4g1062 1511 SUPERFAMILY ABC transporter transmembrane region 322 624 IPR036640 GO:0005524|GO:0016021
Lan4g1062 1511 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 646 869 IPR003439 GO:0005524
Lan4g1062 1511 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 82 1510 - -
Lan4g1062 1511 SMART AAA_5 673 854 IPR003593 -
Lan4g1062 1511 SMART AAA_5 1295 1479 IPR003593 -
Lan4g1062 1511 PANTHER ABC TRANSPORTER C FAMILY MEMBER 4 82 1510 - -
Lan4g1062 1511 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 643 867 IPR027417 -
Lan4g1062 1511 Pfam ABC transporter transmembrane region 956 1205 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lan4g1062 1511 Pfam ABC transporter transmembrane region 333 599 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lan4g1062 1511 ProSitePatterns ABC transporters family signature. 771 785 IPR017871 GO:0005524
Lan4g1062 1511 CDD ABCC_MRP_domain2 1267 1487 - -
Lan4g1062 1511 Pfam ABC transporter 664 797 IPR003439 GO:0005524
Lan4g1062 1511 Pfam ABC transporter 1286 1434 IPR003439 GO:0005524
Lan4g1062 1511 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 333 612 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lan4g1062 1511 MobiDBLite consensus disorder prediction 893 916 - -
Lan4g1062 1511 CDD ABCC_MRP_domain1 646 845 - -
Lan4g1062 1511 MobiDBLite consensus disorder prediction 893 926 - -
Lan4g1062 1511 Gene3D - 625 890 IPR027417 -
Lan4g1062 1511 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 954 1232 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lan4g1062 1511 Coils Coil 1140 1160 - -
Lan4g1062 1511 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1269 1503 IPR003439 GO:0005524
Lan4g1062 1511 SUPERFAMILY ABC transporter transmembrane region 949 1249 IPR036640 GO:0005524|GO:0016021
Lan4g1062 1511 CDD ABC_6TM_ABCC_D2 952 1244 IPR044726 GO:0140359
Lan4g1062 1511 Gene3D ABC transporter type 1, transmembrane domain 319 624 IPR036640 GO:0005524|GO:0016021
Lan4g1062 1511 Gene3D ABC transporter type 1, transmembrane domain 915 1250 IPR036640 GO:0005524|GO:0016021
Lan4g1062 1511 Gene3D - 1253 1501 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1062 Lan-Chr4 15511555 15518408 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1062 646 1502 Calmodulin-binding Proteins AT2G36910 24.735 7.38e-60 224