Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1050 ATGAGTGCTTCTTCTTTCCATAATAGACGATGTGATTATTGTGCTAAAACAAAAGCACTTTTATACTGCAGAGCAGATTCTGCAAAACTCTGTTTCTCTTGTGACCGTGAAGTTCATTCAACAAACCAGCTTTTCTCAAAGCACACTCGTTTTCTTCTCTGTGATACATGTGATGATTCCCCTGCTACTATACTCTGTTCAACAGAGTCCTCTGTTTTGTGTCAGAATTGTGACTGGGAAAAACACAACAATTCTTCTTCTTCTGTGCATGAAAGAAGGCCTCTTGAAGGGTTCAATGGGTGCCCTTGTGTCAATGAATTGTTAGCAATTGTGGGGTTTGAAGATGTTGGAAAAAAATATCTGCTTTCTTCAGATTTGGAAAGTGGGGATGGGTTTTTGGAGTATGAGATTGAAGGAATTTCAGATTTGTTTGTATGGGATGCTCCTTCTGTTGTTAGTATGGATGATTTGATTTCTACTTCTGGCTCTTCTCATAATTATCAGGCTATGGAGGTTCCTCCACTACCCAAGAATCGTAAGGTTGCTTGTGGGAAGCACAAAGAAGAGGTTCTTAATCAGCTTTCAAAGCTAGCAAAGTCTGAGCCCTTAGAGTTGGATAATGAACAATATGTACCACTAGAGAATTTGTTCACTGGTTTTGAAGATAACTTAGAGGCTGATTTGTTTCCTTCTTTTGAGTGGCATGGAGAAAGCAGTGAGCATATAAATCAAGTAGTTCCACTCCAACCTGATACATCAGTAAGAGCTTATACAGAAGAAGTTCAAGTTAAGCATTCAACTTCTGTTTGGGAGACTCATACTTTTGCTGAAACTACTCCTAAATCTGTTCCTTGTGAGTTAACAAGTCAAGAAAGAGATTCTGCATTGCTAAGGTACAAGCAGAAGAAGAAAACAAGAAGATATGAGAAGCACATAAGATATGAATCACGAAAAGTTCGAGCAGAAAGCAGGGTAAGAGTTAATGGCAGATTTGCAAAGATGAAAGACTGA 1011 0.3867 MSASSFHNRRCDYCAKTKALLYCRADSAKLCFSCDREVHSTNQLFSKHTRFLLCDTCDDSPATILCSTESSVLCQNCDWEKHNNSSSSVHERRPLEGFNGCPCVNELLAIVGFEDVGKKYLLSSDLESGDGFLEYEIEGISDLFVWDAPSVVSMDDLISTSGSSHNYQAMEVPPLPKNRKVACGKHKEEVLNQLSKLAKSEPLELDNEQYVPLENLFTGFEDNLEADLFPSFEWHGESSEHINQVVPLQPDTSVRAYTEEVQVKHSTSVWETHTFAETTPKSVPCELTSQERDSALLRYKQKKKTRRYEKHIRYESRKVRAESRVRVNGRFAKMKD* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1050 336 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Lan4g1050 336 Pfam B-box zinc finger 8 50 IPR000315 GO:0008270
Lan4g1050 336 SMART bboxneu5 54 95 IPR000315 GO:0008270
Lan4g1050 336 SMART bboxneu5 6 53 IPR000315 GO:0008270
Lan4g1050 336 Pfam CCT motif 292 334 IPR010402 GO:0005515
Lan4g1050 336 ProSiteProfiles Zinc finger B-box type profile. 6 53 IPR000315 GO:0008270
Lan4g1050 336 CDD Bbox1_BBX-like 53 95 - -
Lan4g1050 336 ProSiteProfiles Zinc finger B-box type profile. 49 95 IPR000315 GO:0008270
Lan4g1050 336 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 7 335 - -
Lan4g1050 336 CDD Bbox1_BBX-like 11 53 - -
Lan4g1050 336 ProSiteProfiles CCT domain profile. 292 334 IPR010402 GO:0005515
Lan4g1050 336 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 13 7 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1050 Lan-Chr4 15247278 15251209 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1050 1 307 C2C2-CO-like Transcription Factor Family AT2G47890 42.988 1.18e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lan4g1050 CCT 5.6e-14 CL0281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g1050 4 15247278 15251209 Lan16g0876 16 15596429 15599411 LSH