Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1046 ATGTCGGAAATGAAAGAAGAGAATAAATCTAACGAGGAAAGTGTGAAACTGTTCGTGGGTCAAGTACCAAAACACATGACCGAAGATGAATTAGTTACAATGTTCAAAGAGTTTGTGTTAGTTGAACAAGTCAACATTATCAAGGACAAAGCCACACGCGCCTCCAGAGGTTGTTGTTTCTTGATTTGTCCGTCGAGGGAAGAAGCGGATAAGGCAGTTGATGCATATCATAATAAGAAAACTCTACCAGGGGCCTCTAGTCCATTGCAAGTGAAGTATGCAGATGGCGAGTTGGAAAGACTAGAACACAAACTCTTCATTGGCATGCTTCCAAAGAATGTTTCTGAAGTTGAAGTCACTGCACTTTTCTCCAATTATGGAACTATAAAGGATTTACAGATTTTAAGAGGTTCTCAGCAAACAAGTAAAGTAGGTTGTGCATTTTTGAAGTATGAAACCAAAGAACAGGCACTGGCTGCTTTGGAGGCAATTAATGGAAAACATAAAATGGAGGGTTCAAGTGTTCCATTGGTTGTCAAATGGGCTGATACTGAAAAGGAAAGACAAGCTCGGAGAGCTCAGAAAGCACAGTCCGAAGCTTCTAATTTGCCACATGCCGATTCTCAGCATCCTTCATTATTTGGGGCCATGCCAATGGGTTATGTTCCTCCATATAATGGATATGGTTACCAGGCTCCTGGAGGTTATGGGATCATGCCATACCGCTTTCCACCAGTGCAGAATCAACCTGGTTTTCATAACATGATACCTCACACGAATCAACGGCCTGATCTCGGCCCCAATATGAACCCGAGAAATTATCCTTTGCATCCTGCAAGTTATGTTGGCTCTTACCCTGCTGTGCCAGGTGTACAACATCCAATGGCATATCCTGGAGGAATGAGTAGTCCAAGACCTATGAATAGTTCTCCTGGTTTCATTTCACCCGCAGGTGGAAATAGCAACTCTTTTACATCTTCAGGCACAGGCAAACATTCCGGTGGTGGTCAGGTTGAAGGACCACCTGGTGCAAATTTATTTATTTATCACATACCTCAAGAATTCGGAGATGAAGAGCTTGCAACAGCTTTTCAACCATTTGGTAGAGTTGTGAGTGCTAAAGTTTTTGTCGATAAAGCGACCGGAGTTAGCAAATGTTTCGGGTTTGTTAGTTATGATTCTCCAGAAGCTGCTGAATCTGCCATTAGTGTGATGAATGGATACCAATTAGGAGGTAAGAAATTAAAGGTTCAGCTTAAGAGAAACACCAATCAGAGTAAGCCATACTGA 1290 0.4225 MSEMKEENKSNEESVKLFVGQVPKHMTEDELVTMFKEFVLVEQVNIIKDKATRASRGCCFLICPSREEADKAVDAYHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEVTALFSNYGTIKDLQILRGSQQTSKVGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSEASNLPHADSQHPSLFGAMPMGYVPPYNGYGYQAPGGYGIMPYRFPPVQNQPGFHNMIPHTNQRPDLGPNMNPRNYPLHPASYVGSYPAVPGVQHPMAYPGGMSSPRPMNSSPGFISPAGGNSNSFTSSGTGKHSGGGQVEGPPGANLFIYHIPQEFGDEELATAFQPFGRVVSAKVFVDKATGVSKCFGFVSYDSPEAAESAISVMNGYQLGGKKLKVQLKRNTNQSKPY* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1046 429 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 96 IPR000504 GO:0003723
Lan4g1046 429 Gene3D - 321 428 IPR012677 -
Lan4g1046 429 CDD RRM3_CELF1-6 346 418 - -
Lan4g1046 429 SUPERFAMILY RNA-binding domain, RBD 7 99 IPR035979 GO:0003676
Lan4g1046 429 CDD RRM1_2_CELF1-6_like 104 180 - -
Lan4g1046 429 Gene3D - 99 194 IPR012677 -
Lan4g1046 429 Gene3D - 2 98 IPR012677 -
Lan4g1046 429 CDD RRM1_2_CELF1-6_like 16 92 - -
Lan4g1046 429 MobiDBLite consensus disorder prediction 303 341 - -
Lan4g1046 429 MobiDBLite consensus disorder prediction 186 209 - -
Lan4g1046 429 PANTHER RNA-BINDING PROTEIN-DEFENSE RELATED 1-RELATED 9 416 - -
Lan4g1046 429 PRINTS Paraneoplastic encephalomyelitis antigen family signature 15 30 IPR002343 GO:0003723|GO:1990904
Lan4g1046 429 PRINTS Paraneoplastic encephalomyelitis antigen family signature 108 123 IPR002343 GO:0003723|GO:1990904
Lan4g1046 429 PRINTS Paraneoplastic encephalomyelitis antigen family signature 123 135 IPR002343 GO:0003723|GO:1990904
Lan4g1046 429 PRINTS Paraneoplastic encephalomyelitis antigen family signature 165 182 IPR002343 GO:0003723|GO:1990904
Lan4g1046 429 SUPERFAMILY RNA-binding domain, RBD 103 424 IPR035979 GO:0003676
Lan4g1046 429 MobiDBLite consensus disorder prediction 303 333 - -
Lan4g1046 429 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 184 IPR000504 GO:0003723
Lan4g1046 429 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 169 IPR000504 GO:0003723
Lan4g1046 429 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 346 416 IPR000504 GO:0003723
Lan4g1046 429 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 81 IPR000504 GO:0003723
Lan4g1046 429 PANTHER RNA BINDING PROTEIN 9 416 - -
Lan4g1046 429 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 344 422 IPR000504 GO:0003723
Lan4g1046 429 SMART rrm1_1 345 418 IPR000504 GO:0003723
Lan4g1046 429 SMART rrm1_1 104 180 IPR000504 GO:0003723
Lan4g1046 429 SMART rrm1_1 16 92 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1046 Lan-Chr4 15114129 15119656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1046 330 427 Eukaryotic Initiation Factors Gene Family AT2G23350 32.653 1.83e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1046 K13207 - gmx:100813239 729.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g1046 4 15114129 15119656 Lan2g0199 2 1663726 1669088 LSH