Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1038 ATGGAGGATTTGAAGAAGAGAAAGCTAGACGAGAATGTCAATGGTGATTTTGCTTCCAAAGAAGACCTTCGCTTTCTTCTTGAACCCCTTTCTAAACCTCAACTCGTTGATCTTCTCGCTAAACTAGGGTCCCAATATCCTTCAATTGAAGAAGAAATAAAAAGTATTGCAAGTGCTGATCCTGTCCATCGAAAGCTTTTTGTTCGTGGCTTGGCCTGGAATACCACTTCAGAAACCTTGCGTGCTGCATTTCAAGAGCATGGAGAAATTGAGGAAGGGGCTGTGATCTATGATAAAACAACATCGAAATCCCGTGGCTATGGTTTTATCACTTACAGAAATATGGAGTCAACCCAGCTAGCATTGAAAGCACCTAACAAGTTAATTGATGGAAGATTGGCGGTCTGTAATTTAGCTTGTGAGGGCTTAAACGGAACAAGTAGTGCTTCTGATCTTGCTCTAAGGAAGCTTTATATTGGAAGTTTATCACCAGAAGTCACAAGTGAGATGCTGCTTAGCTATTTTGCAAGGCATGGTGAAATAGAGGAAGGTTCAGTTGCATATGACAAGGATACAAATGAATCACGTGGTTTTGGCTTTGTTACATACAAGGCAGCAGAGGCTGCAAAGAAAGCCATTGACGACCCGGAAAAGACTCTTGGGGGGAGGAATATAATTGTAAAATATGCTGATTCTAACAAGGGTAAAACTGGGCAGCAATCATTTCCTGCAGGAGTGGTTCCGATGGCACCCTTACCTATGGTCCCAGGATATGTGCAGCCTGGAAAAGCCCACGTCGGTGCTGCTGCCCCAGTCGGCTACACTTACCCCCAAGCTGTAGCTCCATATCCTGCATCTTCTTATCCCGTTGCACCATCTCCTTATCCAACACAAGGGCAGGTTCCGTATCGTCCAGTTTCTTCCCAGAAAGACCGACTCGGGTTCCCGCCAGCTCAGCTCGTGGGAATGAACAATTACCCTTATTGCTATCCCAAGCAATGA 1002 0.4491 MEDLKKRKLDENVNGDFASKEDLRFLLEPLSKPQLVDLLAKLGSQYPSIEEEIKSIASADPVHRKLFVRGLAWNTTSETLRAAFQEHGEIEEGAVIYDKTTSKSRGYGFITYRNMESTQLALKAPNKLIDGRLAVCNLACEGLNGTSSASDLALRKLYIGSLSPEVTSEMLLSYFARHGEIEEGSVAYDKDTNESRGFGFVTYKAAEAAKKAIDDPEKTLGGRNIIVKYADSNKGKTGQQSFPAGVVPMAPLPMVPGYVQPGKAHVGAAAPVGYTYPQAVAPYPASSYPVAPSPYPTQGQVPYRPVSSQKDRLGFPPAQLVGMNNYPYCYPKQ* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1038 333 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 157 225 IPR000504 GO:0003723
Lan4g1038 333 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 66 132 IPR000504 GO:0003723
Lan4g1038 333 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 16 333 - -
Lan4g1038 333 Gene3D - 55 141 IPR012677 -
Lan4g1038 333 SUPERFAMILY RNA-binding domain, RBD 153 244 IPR035979 GO:0003676
Lan4g1038 333 Gene3D - 142 243 IPR012677 -
Lan4g1038 333 SUPERFAMILY RNA-binding domain, RBD 50 142 IPR035979 GO:0003676
Lan4g1038 333 CDD RRM_RBM24_RBM38_like 64 139 - -
Lan4g1038 333 PANTHER UBP1-ASSOCIATED PROTEIN 2C-LIKE 16 333 - -
Lan4g1038 333 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 155 232 IPR000504 GO:0003723
Lan4g1038 333 SMART rrm1_1 156 228 IPR000504 GO:0003723
Lan4g1038 333 SMART rrm1_1 65 137 IPR000504 GO:0003723
Lan4g1038 333 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 64 164 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1038 Lan-Chr4 14885454 14889371 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1038 147 266 C2H2 Transcription Factor Family AT2G19380 33.071 3.83e-15 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1038 K12741 - gmx:100776344 522.702