Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1035 ATGGATACCCGCAAGAGAGGAAGGCACGACTTCAATAACTTCAATGGCGGCTTCAAGAAAACAAAGCAAGAAATGGACTCCATTTCAACTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTGCCGGATGCCCATTTGGTGAGAGCTGCCACTTCCTACACTATGTTCCTGGTGGTTATAATGCTGTTGCCCATTTGATGCATATAACACCTGCTACACCTACACCATCTAGAAATGTCTCAGCCACACCACCTATCCCAAATGGGTCCGCACAGCCTACAGTTAAAAGTCGTATGTGCAACAAGTTTAATACTGCTGAAGGCTGCAAATTTGGTGACAAATGCCATTATGCCCATGGTGAATGGGAACTTGGCAGGCCTTTTGCCCCATCGTTTGATGATCATCGTGCCATGGGACCCCCTTCAGCAAGTCGTATGCCTAGTCGAATGGATCCACCTCCTCCTGGTCTAGCTGCTAGCTTTGGCGCCAATGCAACTGCCAAGATCAGCGTAGAAGCTTCCCTGGCTGGAGCAATCATTGGGAAGGGTGGTGTGAACTCGAAGCAGATCTGTCGCCAAACAGGAGCCAAACTTTCAATTCGTGATCATGAATCTGATCCAAATCTTAGAAACATTGAACTCGAGGGAAGTTTTGAACAAATCAAGGAAGCGAGTAACATGGTAAAGGAATTACTTTTCACCCTACAGATGTCTGCACCACCAAAATCAATCCCTGGTGTTCCTGGTGGTCATGCCCCTCCTGGAAGCAATTTCAAGACCAAGCTGTGTGATAATTTTACGAAAGGATCTTGCACTTTTGGAGAAAGATGTCACTTTGCACATGGAGCCGCCGAACTGCGGAAATGA 879 0.4687 MDTRKRGRHDFNNFNGGFKKTKQEMDSISTGVGSKSKPCTKFFSTAGCPFGESCHFLHYVPGGYNAVAHLMHITPATPTPSRNVSATPPIPNGSAQPTVKSRMCNKFNTAEGCKFGDKCHYAHGEWELGRPFAPSFDDHRAMGPPSASRMPSRMDPPPPGLAASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRDHESDPNLRNIELEGSFEQIKEASNMVKELLFTLQMSAPPKSIPGVPGGHAPPGSNFKTKLCDNFTKGSCTFGERCHFAHGAAELRK* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1035 292 SMART kh_6 167 237 IPR004087 GO:0003676
Lan4g1035 292 ProSiteProfiles Zinc finger C3H1-type profile. 33 61 IPR000571 GO:0046872
Lan4g1035 292 MobiDBLite consensus disorder prediction 79 99 - -
Lan4g1035 292 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 262 286 IPR000571 GO:0046872
Lan4g1035 292 Pfam KH domain 171 234 IPR004088 GO:0003723
Lan4g1035 292 SMART c3hfinal6 261 287 IPR000571 GO:0046872
Lan4g1035 292 SMART c3hfinal6 100 125 IPR000571 GO:0046872
Lan4g1035 292 SMART c3hfinal6 33 60 IPR000571 GO:0046872
Lan4g1035 292 ProSiteProfiles Type-1 KH domain profile. 168 232 - -
Lan4g1035 292 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 8 292 - -
Lan4g1035 292 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 158 240 IPR036612 GO:0003723
Lan4g1035 292 ProSiteProfiles Zinc finger C3H1-type profile. 261 288 IPR000571 GO:0046872
Lan4g1035 292 SUPERFAMILY CCCH zinc finger 97 129 IPR036855 GO:0046872
Lan4g1035 292 Gene3D K Homology domain, type 1 164 259 IPR036612 GO:0003723
Lan4g1035 292 Gene3D - 93 130 - -
Lan4g1035 292 Gene3D - 260 292 - -
Lan4g1035 292 ProSiteProfiles Zinc finger C3H1-type profile. 98 126 IPR000571 GO:0046872
Lan4g1035 292 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 8 292 - -
Lan4g1035 292 CDD KH-I 170 233 - -
Lan4g1035 292 Pfam RNA-binding, Nab2-type zinc finger 38 58 - -
Lan4g1035 292 Pfam RNA-binding, Nab2-type zinc finger 107 124 - -
Lan4g1035 292 SUPERFAMILY CCCH zinc finger 261 291 IPR036855 GO:0046872
Lan4g1035 292 SUPERFAMILY CCCH zinc finger 34 59 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1035 Lan-Chr4 14748749 14752152 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan4g1035 KH_1 2.4e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1035 - - gmx:100803981 496.893