Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1028 ATGGGGGACGAGACTTCCGATGCAATGAACCTCGATTTGAATCTGGGTCCAGGCCCGGAGCCACCAGCTGGGTCCACAGTCAATGAAGCTATGAACTTGGATGATTGGATTGATGAGCCTCTTAGATTCAGTGAAGCTTTGAGGCTTAGGTCACGGTGGAGATGGCGACAGCTTCCTGTCACTCCTCCTCCTGCAGTTCATGTTCATTTTCCAGAAGTGCCACGCCATTTGCATTTTCATATACCACCGGAAGCTCGAAATATCTCCATGGAATTGAACCAGTTTCTGGTCAATTCGGGTAATGGAAGTCTCTTACAGGCTGGTGAAGGCAGTGTGGCTGCTGAGGAGAGAATAGAGGTGGAGATTCCCAAGGCATGTGAAAACAATAATGGTGTTATGGAGGACGAGACAACAGTGAAGAAGGATGATGTTGAAAAGGGTAGTGGCAATGTTGGGGATTTTTTCGATTGTAATATCTGTTTGGACCTGGCCAAGGATCCTGTTGTGACTTGTTGTGGTCATTTGTTTTGTTGGCCATGCCTGTACCGATGGCTGCATTTACATTCAGATGCTAAGGAATGTCCAGTTTGCAAGGGAGAGGTGACTCTAAAGAATGTTACCCCGATATATGGTCGTGGGAACAATATTCGAGTTCCTGAGGAAGATGCCACTCTTAAAATCCCTCTCAGGCCCCATGCTAGGCGTGTTGAGAGTTTGAGACAAACCCTTCAGGGAACTGCATTCCCTGTCGAAGAGATGATTCGACGTCTTGGAAGCAGAATTGATATTACTAGGGATTTAGTTCAGTCAAATGAACCAGACAATGCTCGTGAAACGGCTGAGAGAACCAGTTCCTTGCTAAGTAGGTTTTTGACATCTCGAGGTATACGGAGAGAGCAGAATGTTGGGGCACCCCCTGATGACGTGGTGGGTTTGCCACAGAATAATCTTCCTGGGGCAGGGGATATCCGGAGGGAATCCCTTTTACTTCGAAGAACATCATCAAATAGAGCAAGATATACATCAGCAGCAGTGAGTAGTTCTGCTGAAAGGTTAGTGGATGCATATTTCAGCAGCCATCCATTCGGTAGAAACCAAGACCAACCTCTTCCAGTTGATGACAGAGATTCCTTTTCAAGCATTGGTGCTGTCATAAATTCTGAGAGTCAAGTGGACACTGCTGTTGAAATTGATTCCATGGTATCCTTGTCATCAACTTCTAGGAGGAGAAATGATGCTTCAAGAGTGTCTGATGTGGACAGTGGAGATTCTCGTGCTCCTAGGCGAAGACGTTTGAACTGA 1302 0.4639 MGDETSDAMNLDLNLGPGPEPPAGSTVNEAMNLDDWIDEPLRFSEALRLRSRWRWRQLPVTPPPAVHVHFPEVPRHLHFHIPPEARNISMELNQFLVNSGNGSLLQAGEGSVAAEERIEVEIPKACENNNGVMEDETTVKKDDVEKGSGNVGDFFDCNICLDLAKDPVVTCCGHLFCWPCLYRWLHLHSDAKECPVCKGEVTLKNVTPIYGRGNNIRVPEEDATLKIPLRPHARRVESLRQTLQGTAFPVEEMIRRLGSRIDITRDLVQSNEPDNARETAERTSSLLSRFLTSRGIRREQNVGAPPDDVVGLPQNNLPGAGDIRRESLLLRRTSSNRARYTSAAVSSSAERLVDAYFSSHPFGRNQDQPLPVDDRDSFSSIGAVINSESQVDTAVEIDSMVSLSSTSRRRNDASRVSDVDSGDSRAPRRRRLN* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1028 433 ProSiteProfiles Zinc finger RING-type profile. 157 198 IPR001841 -
Lan4g1028 433 PANTHER OS01G0830200 PROTEIN 12 433 - -
Lan4g1028 433 Pfam Zinc finger, C3HC4 type (RING finger) 157 197 - -
Lan4g1028 433 ProSitePatterns Zinc finger RING-type signature. 172 181 IPR017907 -
Lan4g1028 433 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 12 433 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lan4g1028 433 SUPERFAMILY RING/U-box 150 211 - -
Lan4g1028 433 MobiDBLite consensus disorder prediction 401 433 - -
Lan4g1028 433 CDD RING-HC_AtRMA_like 155 199 - -
Lan4g1028 433 MobiDBLite consensus disorder prediction 1 23 - -
Lan4g1028 433 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 247 IPR013083 -
Lan4g1028 433 MobiDBLite consensus disorder prediction 411 433 - -
Lan4g1028 433 SMART ring_2 157 197 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1028 Lan-Chr4 14630489 14632720 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1028 1 424 C3H Transcription Factor Family AT3G58030 51.106 5.47e-128 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1028 K10666 - gmx:100811099 622.083